While I was trying to install pymrmr with pip, installation was failed with the following error.
gcc, build-essential, python-dev and python3.7-dev already installed in the system.
Collecting pymrmr
Using cached https://files.pythonhosted.org/packages/b3/ab/903712947a2f5cd1af249132885dbd81ae8bf8cfd30fb3b3f2beddab23e8/pymrmr-0.1.8.tar.gz
Requirement already satisfied: numpy>=1.12.0 in ./.local/lib/python3.7/site-packages (from pymrmr) (1.15.0)
Building wheels for collected packages: pymrmr
Running setup.py bdist_wheel for pymrmr ... error
Complete output from command /usr/bin/python3.7 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-febd25wn/pymrmr/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-4_ly8i5r --python-tag cp37:
running bdist_wheel
running build
running build_py
package init file 'pymrmr/__init__.py' not found (or not a regular file)
running egg_info
writing pymrmr.egg-info/PKG-INFO
writing dependency_links to pymrmr.egg-info/dependency_links.txt
writing requirements to pymrmr.egg-info/requires.txt
writing top-level names to pymrmr.egg-info/top_level.txt
reading manifest file 'pymrmr.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
warning: no files found matching '*.jpg' under directory 'docs'
warning: no files found matching '*.png' under directory 'docs'
warning: no files found matching '*.gif' under directory 'docs'
writing manifest file 'pymrmr.egg-info/SOURCES.txt'
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/crank.cpp -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/mrmr.cpp -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/nrutil.cpp -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/nrutil.h -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/pbetai.cpp -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/pymrmr.cpp -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/pymrmr.pyx -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/sort2.cpp -> build/lib.linux-x86_64-3.7/pymrmr
running build_ext
skipping 'pymrmr/pymrmr.cpp' Cython extension (up-to-date)
building 'pymrmr' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/pymrmr
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/ssec/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c pymrmr/pymrmr.cpp -o build/temp.linux-x86_64-3.7/pymrmr/pymrmr.o -fopenmp -Ofast
In file included from /home/ssec/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821:0,
from /home/ssec/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /home/ssec/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from pymrmr/pymrmr.cpp:455:
/home/ssec/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
In file included from pymrmr/mrmr.cpp:23:0,
from pymrmr/pymrmr.cpp:457:
pymrmr/pbetai.cpp: In function ‘float betacf(float, float, float)’:
pymrmr/pbetai.cpp:74:72: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (m > MAXIT) nrerror("a or b too big, or MAXIT too small in betacf");
^
pymrmr/pbetai.cpp: In function ‘float betai(float, float, float)’:
pymrmr/pbetai.cpp:87:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (x < 0.0 || x > 1.0) nrerror("Bad x in routine betai");
^
In file included from pymrmr/sort2.cpp:3:0,
from pymrmr/mrmr.cpp:24,
from pymrmr/pymrmr.cpp:457:
pymrmr/nrutil.cpp: In function ‘float* vector(long int, long int)’:
pymrmr/nrutil.cpp:31:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!v) nrerror("allocation failure in vector()");
^
pymrmr/nrutil.cpp: In function ‘float* vector_phc(long int, long int)’:
pymrmr/nrutil.cpp:41:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!v) nrerror("allocation failure in vector()");
^
pymrmr/nrutil.cpp: In function ‘int* ivector(long int, long int)’:
pymrmr/nrutil.cpp:51:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!v) nrerror("allocation failure in ivector()");
^
pymrmr/nrutil.cpp: In function ‘unsigned char* cvector(long int, long int)’:
pymrmr/nrutil.cpp:61:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!v) nrerror("allocation failure in cvector()");
^
pymrmr/nrutil.cpp: In function ‘long unsigned int* lvector(long int, long int)’:
pymrmr/nrutil.cpp:71:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!v) nrerror("allocation failure in lvector()");
^
pymrmr/nrutil.cpp: In function ‘double* dvector(long int, long int)’:
pymrmr/nrutil.cpp:81:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!v) nrerror("allocation failure in dvector()");
^
pymrmr/nrutil.cpp: In function ‘float** matrix(long int, long int, long int, long int)’:
pymrmr/nrutil.cpp:93:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m) nrerror("allocation failure 1 in matrix()");
^
pymrmr/nrutil.cpp:99:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m[nrl]) nrerror("allocation failure 2 in matrix()");
^
pymrmr/nrutil.cpp: In function ‘double** dmatrix(long int, long int, long int, long int)’:
pymrmr/nrutil.cpp:117:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m) nrerror("allocation failure 1 in matrix()");
^
pymrmr/nrutil.cpp:123:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m[nrl]) nrerror("allocation failure 2 in matrix()");
^
pymrmr/nrutil.cpp: In function ‘int** imatrix(long int, long int, long int, long int)’:
pymrmr/nrutil.cpp:141:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m) nrerror("allocation failure 1 in matrix()");
^
pymrmr/nrutil.cpp:148:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m[nrl]) nrerror("allocation failure 2 in matrix()");
^
pymrmr/nrutil.cpp: In function ‘float** submatrix(float**, long int, long int, long int, long int, long int, long int)’:
pymrmr/nrutil.cpp:167:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m) nrerror("allocation failure in submatrix()");
^
pymrmr/nrutil.cpp: In function ‘float** convert_matrix(float*, long int, long int, long int, long int)’:
pymrmr/nrutil.cpp:189:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m) nrerror("allocation failure in convert_matrix()");
^
pymrmr/nrutil.cpp: In function ‘float*** f3tensor(long int, long int, long int, long int, long int, long int)’:
pymrmr/nrutil.cpp:208:54: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!t) nrerror("allocation failure 1 in f3tensor()");
^
pymrmr/nrutil.cpp:214:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!t[nrl]) nrerror("allocation failure 2 in f3tensor()");
^
pymrmr/nrutil.cpp:220:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!t[nrl][ncl]) nrerror("allocation failure 3 in f3tensor()");
^
In file included from pymrmr/mrmr.cpp:24:0,
from pymrmr/pymrmr.cpp:457:
pymrmr/sort2.cpp: In function ‘void sort2(long unsigned int, float*, float*)’:
pymrmr/sort2.cpp:68:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (jstack > NSTACK) nrerror("NSTACK too small in sort2.");
^
pymrmr/pymrmr.cpp: In function ‘PyObject* __Pyx_PyCFunction_FastCall(PyObject*, PyObject**, Py_ssize_t)’:
pymrmr/pymrmr.cpp:5418:69: error: too many arguments to function
return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL);
^
pymrmr/pymrmr.cpp: In function ‘void __Pyx__ExceptionSave(PyThreadState*, PyObject**, PyObject**, PyObject**)’:
pymrmr/pymrmr.cpp:5990:21: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’; did you mean ‘curexc_type’?
*type = tstate->exc_type;
^~~~~~~~
curexc_type
pymrmr/pymrmr.cpp:5991:22: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’; did you mean ‘curexc_value’?
*value = tstate->exc_value;
^~~~~~~~~
curexc_value
pymrmr/pymrmr.cpp:5992:19: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
*tb = tstate->exc_traceback;
^~~~~~~~~~~~~
curexc_traceback
pymrmr/pymrmr.cpp: In function ‘void __Pyx__ExceptionReset(PyThreadState*, PyObject*, PyObject*, PyObject*)’:
pymrmr/pymrmr.cpp:5999:24: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’; did you mean ‘curexc_type’?
tmp_type = tstate->exc_type;
^~~~~~~~
curexc_type
pymrmr/pymrmr.cpp:6000:25: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’; did you mean ‘curexc_value’?
tmp_value = tstate->exc_value;
^~~~~~~~~
curexc_value
pymrmr/pymrmr.cpp:6001:22: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
tmp_tb = tstate->exc_traceback;
^~~~~~~~~~~~~
curexc_traceback
pymrmr/pymrmr.cpp:6002:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’; did you mean ‘curexc_type’?
tstate->exc_type = type;
^~~~~~~~
curexc_type
pymrmr/pymrmr.cpp:6003:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’; did you mean ‘curexc_value’?
tstate->exc_value = value;
^~~~~~~~~
curexc_value
pymrmr/pymrmr.cpp:6004:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
tstate->exc_traceback = tb;
^~~~~~~~~~~~~
curexc_traceback
pymrmr/pymrmr.cpp: In function ‘int __Pyx__GetException(PyThreadState*, PyObject**, PyObject**, PyObject**)’:
pymrmr/pymrmr.cpp:6059:24: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’; did you mean ‘curexc_type’?
tmp_type = tstate->exc_type;
^~~~~~~~
curexc_type
pymrmr/pymrmr.cpp:6060:25: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’; did you mean ‘curexc_value’?
tmp_value = tstate->exc_value;
^~~~~~~~~
curexc_value
pymrmr/pymrmr.cpp:6061:22: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
tmp_tb = tstate->exc_traceback;
^~~~~~~~~~~~~
curexc_traceback
pymrmr/pymrmr.cpp:6062:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’; did you mean ‘curexc_type’?
tstate->exc_type = local_type;
^~~~~~~~
curexc_type
pymrmr/pymrmr.cpp:6063:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’; did you mean ‘curexc_value’?
tstate->exc_value = local_value;
^~~~~~~~~
curexc_value
pymrmr/pymrmr.cpp:6064:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
tstate->exc_traceback = local_tb;
^~~~~~~~~~~~~
curexc_traceback
In file included from pymrmr/nrutil.cpp:7:0,
from pymrmr/sort2.cpp:3,
from pymrmr/mrmr.cpp:24,
from pymrmr/pymrmr.cpp:457:
pymrmr/nrutil.h: At global scope:
pymrmr/nrutil.h:38:21: warning: ‘iminarg2’ defined but not used [-Wunused-variable]
static int iminarg1,iminarg2;
^~~~~~~~
pymrmr/nrutil.h:38:12: warning: ‘iminarg1’ defined but not used [-Wunused-variable]
static int iminarg1,iminarg2;
^~~~~~~~
pymrmr/nrutil.h:34:21: warning: ‘imaxarg2’ defined but not used [-Wunused-variable]
static int imaxarg1,imaxarg2;
^~~~~~~~
pymrmr/nrutil.h:34:12: warning: ‘imaxarg1’ defined but not used [-Wunused-variable]
static int imaxarg1,imaxarg2;
^~~~~~~~
pymrmr/nrutil.h:30:22: warning: ‘lminarg2’ defined but not used [-Wunused-variable]
static long lminarg1,lminarg2;
^~~~~~~~
pymrmr/nrutil.h:30:13: warning: ‘lminarg1’ defined but not used [-Wunused-variable]
static long lminarg1,lminarg2;
^~~~~~~~
pymrmr/nrutil.h:26:22: warning: ‘lmaxarg2’ defined but not used [-Wunused-variable]
static long lmaxarg1,lmaxarg2;
^~~~~~~~
pymrmr/nrutil.h:26:13: warning: ‘lmaxarg1’ defined but not used [-Wunused-variable]
static long lmaxarg1,lmaxarg2;
^~~~~~~~
pymrmr/nrutil.h:22:22: warning: ‘minarg2’ defined but not used [-Wunused-variable]
static float minarg1,minarg2;
^~~~~~~
pymrmr/nrutil.h:22:14: warning: ‘minarg1’ defined but not used [-Wunused-variable]
static float minarg1,minarg2;
^~~~~~~
pymrmr/nrutil.h:18:22: warning: ‘maxarg2’ defined but not used [-Wunused-variable]
static float maxarg1,maxarg2;
^~~~~~~
pymrmr/nrutil.h:18:14: warning: ‘maxarg1’ defined but not used [-Wunused-variable]
static float maxarg1,maxarg2;
^~~~~~~
pymrmr/nrutil.h:14:24: warning: ‘dminarg2’ defined but not used [-Wunused-variable]
static double dminarg1,dminarg2;
^~~~~~~~
pymrmr/nrutil.h:14:15: warning: ‘dminarg1’ defined but not used [-Wunused-variable]
static double dminarg1,dminarg2;
^~~~~~~~
pymrmr/nrutil.h:10:24: warning: ‘dmaxarg2’ defined but not used [-Wunused-variable]
static double dmaxarg1,dmaxarg2;
^~~~~~~~
pymrmr/nrutil.h:10:15: warning: ‘dmaxarg1’ defined but not used [-Wunused-variable]
static double dmaxarg1,dmaxarg2;
^~~~~~~~
pymrmr/nrutil.h:7:15: warning: ‘dsqrarg’ defined but not used [-Wunused-variable]
static double dsqrarg;
^~~~~~~
pymrmr/nrutil.h:4:14: warning: ‘sqrarg’ defined but not used [-Wunused-variable]
static float sqrarg;
^~~~~~
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Failed building wheel for pymrmr
Running setup.py clean for pymrmr
Failed to build pymrmr
Installing collected packages: pymrmr
Running setup.py install for pymrmr ... error
Complete output from command /usr/bin/python3.7 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-febd25wn/pymrmr/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-j0lzuj61/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
package init file 'pymrmr/__init__.py' not found (or not a regular file)
running egg_info
writing pymrmr.egg-info/PKG-INFO
writing dependency_links to pymrmr.egg-info/dependency_links.txt
writing requirements to pymrmr.egg-info/requires.txt
writing top-level names to pymrmr.egg-info/top_level.txt
reading manifest file 'pymrmr.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '__pycache__' found under directory '*'
warning: no previously-included files matching '*.py[co]' found under directory '*'
warning: no files found matching '*.jpg' under directory 'docs'
warning: no files found matching '*.png' under directory 'docs'
warning: no files found matching '*.gif' under directory 'docs'
writing manifest file 'pymrmr.egg-info/SOURCES.txt'
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/crank.cpp -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/mrmr.cpp -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/nrutil.cpp -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/nrutil.h -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/pbetai.cpp -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/pymrmr.cpp -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/pymrmr.pyx -> build/lib.linux-x86_64-3.7/pymrmr
copying pymrmr/sort2.cpp -> build/lib.linux-x86_64-3.7/pymrmr
running build_ext
skipping 'pymrmr/pymrmr.cpp' Cython extension (up-to-date)
building 'pymrmr' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/pymrmr
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/ssec/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c pymrmr/pymrmr.cpp -o build/temp.linux-x86_64-3.7/pymrmr/pymrmr.o -fopenmp -Ofast
In file included from /home/ssec/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821:0,
from /home/ssec/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /home/ssec/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from pymrmr/pymrmr.cpp:455:
/home/ssec/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
In file included from pymrmr/mrmr.cpp:23:0,
from pymrmr/pymrmr.cpp:457:
pymrmr/pbetai.cpp: In function ‘float betacf(float, float, float)’:
pymrmr/pbetai.cpp:74:72: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (m > MAXIT) nrerror("a or b too big, or MAXIT too small in betacf");
^
pymrmr/pbetai.cpp: In function ‘float betai(float, float, float)’:
pymrmr/pbetai.cpp:87:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (x < 0.0 || x > 1.0) nrerror("Bad x in routine betai");
^
In file included from pymrmr/sort2.cpp:3:0,
from pymrmr/mrmr.cpp:24,
from pymrmr/pymrmr.cpp:457:
pymrmr/nrutil.cpp: In function ‘float* vector(long int, long int)’:
pymrmr/nrutil.cpp:31:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!v) nrerror("allocation failure in vector()");
^
pymrmr/nrutil.cpp: In function ‘float* vector_phc(long int, long int)’:
pymrmr/nrutil.cpp:41:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!v) nrerror("allocation failure in vector()");
^
pymrmr/nrutil.cpp: In function ‘int* ivector(long int, long int)’:
pymrmr/nrutil.cpp:51:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!v) nrerror("allocation failure in ivector()");
^
pymrmr/nrutil.cpp: In function ‘unsigned char* cvector(long int, long int)’:
pymrmr/nrutil.cpp:61:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!v) nrerror("allocation failure in cvector()");
^
pymrmr/nrutil.cpp: In function ‘long unsigned int* lvector(long int, long int)’:
pymrmr/nrutil.cpp:71:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!v) nrerror("allocation failure in lvector()");
^
pymrmr/nrutil.cpp: In function ‘double* dvector(long int, long int)’:
pymrmr/nrutil.cpp:81:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!v) nrerror("allocation failure in dvector()");
^
pymrmr/nrutil.cpp: In function ‘float** matrix(long int, long int, long int, long int)’:
pymrmr/nrutil.cpp:93:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m) nrerror("allocation failure 1 in matrix()");
^
pymrmr/nrutil.cpp:99:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m[nrl]) nrerror("allocation failure 2 in matrix()");
^
pymrmr/nrutil.cpp: In function ‘double** dmatrix(long int, long int, long int, long int)’:
pymrmr/nrutil.cpp:117:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m) nrerror("allocation failure 1 in matrix()");
^
pymrmr/nrutil.cpp:123:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m[nrl]) nrerror("allocation failure 2 in matrix()");
^
pymrmr/nrutil.cpp: In function ‘int** imatrix(long int, long int, long int, long int)’:
pymrmr/nrutil.cpp:141:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m) nrerror("allocation failure 1 in matrix()");
^
pymrmr/nrutil.cpp:148:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m[nrl]) nrerror("allocation failure 2 in matrix()");
^
pymrmr/nrutil.cpp: In function ‘float** submatrix(float**, long int, long int, long int, long int, long int, long int)’:
pymrmr/nrutil.cpp:167:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m) nrerror("allocation failure in submatrix()");
^
pymrmr/nrutil.cpp: In function ‘float** convert_matrix(float*, long int, long int, long int, long int)’:
pymrmr/nrutil.cpp:189:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!m) nrerror("allocation failure in convert_matrix()");
^
pymrmr/nrutil.cpp: In function ‘float*** f3tensor(long int, long int, long int, long int, long int, long int)’:
pymrmr/nrutil.cpp:208:54: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!t) nrerror("allocation failure 1 in f3tensor()");
^
pymrmr/nrutil.cpp:214:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!t[nrl]) nrerror("allocation failure 2 in f3tensor()");
^
pymrmr/nrutil.cpp:220:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (!t[nrl][ncl]) nrerror("allocation failure 3 in f3tensor()");
^
In file included from pymrmr/mrmr.cpp:24:0,
from pymrmr/pymrmr.cpp:457:
pymrmr/sort2.cpp: In function ‘void sort2(long unsigned int, float*, float*)’:
pymrmr/sort2.cpp:68:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
if (jstack > NSTACK) nrerror("NSTACK too small in sort2.");
^
pymrmr/pymrmr.cpp: In function ‘PyObject* __Pyx_PyCFunction_FastCall(PyObject*, PyObject**, Py_ssize_t)’:
pymrmr/pymrmr.cpp:5418:69: error: too many arguments to function
return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL);
^
pymrmr/pymrmr.cpp: In function ‘void __Pyx__ExceptionSave(PyThreadState*, PyObject**, PyObject**, PyObject**)’:
pymrmr/pymrmr.cpp:5990:21: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’; did you mean ‘curexc_type’?
*type = tstate->exc_type;
^~~~~~~~
curexc_type
pymrmr/pymrmr.cpp:5991:22: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’; did you mean ‘curexc_value’?
*value = tstate->exc_value;
^~~~~~~~~
curexc_value
pymrmr/pymrmr.cpp:5992:19: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
*tb = tstate->exc_traceback;
^~~~~~~~~~~~~
curexc_traceback
pymrmr/pymrmr.cpp: In function ‘void __Pyx__ExceptionReset(PyThreadState*, PyObject*, PyObject*, PyObject*)’:
pymrmr/pymrmr.cpp:5999:24: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’; did you mean ‘curexc_type’?
tmp_type = tstate->exc_type;
^~~~~~~~
curexc_type
pymrmr/pymrmr.cpp:6000:25: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’; did you mean ‘curexc_value’?
tmp_value = tstate->exc_value;
^~~~~~~~~
curexc_value
pymrmr/pymrmr.cpp:6001:22: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
tmp_tb = tstate->exc_traceback;
^~~~~~~~~~~~~
curexc_traceback
pymrmr/pymrmr.cpp:6002:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’; did you mean ‘curexc_type’?
tstate->exc_type = type;
^~~~~~~~
curexc_type
pymrmr/pymrmr.cpp:6003:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’; did you mean ‘curexc_value’?
tstate->exc_value = value;
^~~~~~~~~
curexc_value
pymrmr/pymrmr.cpp:6004:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
tstate->exc_traceback = tb;
^~~~~~~~~~~~~
curexc_traceback
pymrmr/pymrmr.cpp: In function ‘int __Pyx__GetException(PyThreadState*, PyObject**, PyObject**, PyObject**)’:
pymrmr/pymrmr.cpp:6059:24: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’; did you mean ‘curexc_type’?
tmp_type = tstate->exc_type;
^~~~~~~~
curexc_type
pymrmr/pymrmr.cpp:6060:25: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’; did you mean ‘curexc_value’?
tmp_value = tstate->exc_value;
^~~~~~~~~
curexc_value
pymrmr/pymrmr.cpp:6061:22: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
tmp_tb = tstate->exc_traceback;
^~~~~~~~~~~~~
curexc_traceback
pymrmr/pymrmr.cpp:6062:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’; did you mean ‘curexc_type’?
tstate->exc_type = local_type;
^~~~~~~~
curexc_type
pymrmr/pymrmr.cpp:6063:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’; did you mean ‘curexc_value’?
tstate->exc_value = local_value;
^~~~~~~~~
curexc_value
pymrmr/pymrmr.cpp:6064:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
tstate->exc_traceback = local_tb;
^~~~~~~~~~~~~
curexc_traceback
In file included from pymrmr/nrutil.cpp:7:0,
from pymrmr/sort2.cpp:3,
from pymrmr/mrmr.cpp:24,
from pymrmr/pymrmr.cpp:457:
pymrmr/nrutil.h: At global scope:
pymrmr/nrutil.h:38:21: warning: ‘iminarg2’ defined but not used [-Wunused-variable]
static int iminarg1,iminarg2;
^~~~~~~~
pymrmr/nrutil.h:38:12: warning: ‘iminarg1’ defined but not used [-Wunused-variable]
static int iminarg1,iminarg2;
^~~~~~~~
pymrmr/nrutil.h:34:21: warning: ‘imaxarg2’ defined but not used [-Wunused-variable]
static int imaxarg1,imaxarg2;
^~~~~~~~
pymrmr/nrutil.h:34:12: warning: ‘imaxarg1’ defined but not used [-Wunused-variable]
static int imaxarg1,imaxarg2;
^~~~~~~~
pymrmr/nrutil.h:30:22: warning: ‘lminarg2’ defined but not used [-Wunused-variable]
static long lminarg1,lminarg2;
^~~~~~~~
pymrmr/nrutil.h:30:13: warning: ‘lminarg1’ defined but not used [-Wunused-variable]
static long lminarg1,lminarg2;
^~~~~~~~
pymrmr/nrutil.h:26:22: warning: ‘lmaxarg2’ defined but not used [-Wunused-variable]
static long lmaxarg1,lmaxarg2;
^~~~~~~~
pymrmr/nrutil.h:26:13: warning: ‘lmaxarg1’ defined but not used [-Wunused-variable]
static long lmaxarg1,lmaxarg2;
^~~~~~~~
pymrmr/nrutil.h:22:22: warning: ‘minarg2’ defined but not used [-Wunused-variable]
static float minarg1,minarg2;
^~~~~~~
pymrmr/nrutil.h:22:14: warning: ‘minarg1’ defined but not used [-Wunused-variable]
static float minarg1,minarg2;
^~~~~~~
pymrmr/nrutil.h:18:22: warning: ‘maxarg2’ defined but not used [-Wunused-variable]
static float maxarg1,maxarg2;
^~~~~~~
pymrmr/nrutil.h:18:14: warning: ‘maxarg1’ defined but not used [-Wunused-variable]
static float maxarg1,maxarg2;
^~~~~~~
pymrmr/nrutil.h:14:24: warning: ‘dminarg2’ defined but not used [-Wunused-variable]
static double dminarg1,dminarg2;
^~~~~~~~
pymrmr/nrutil.h:14:15: warning: ‘dminarg1’ defined but not used [-Wunused-variable]
static double dminarg1,dminarg2;
^~~~~~~~
pymrmr/nrutil.h:10:24: warning: ‘dmaxarg2’ defined but not used [-Wunused-variable]
static double dmaxarg1,dmaxarg2;
^~~~~~~~
pymrmr/nrutil.h:10:15: warning: ‘dmaxarg1’ defined but not used [-Wunused-variable]
static double dmaxarg1,dmaxarg2;
^~~~~~~~
pymrmr/nrutil.h:7:15: warning: ‘dsqrarg’ defined but not used [-Wunused-variable]
static double dsqrarg;
^~~~~~~
pymrmr/nrutil.h:4:14: warning: ‘sqrarg’ defined but not used [-Wunused-variable]
static float sqrarg;
^~~~~~
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Command "/usr/bin/python3.7 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-febd25wn/pymrmr/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-j0lzuj61/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-install-febd25wn/pymrmr/
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