fephyfofum / gophy Goto Github PK

License: GNU General Public License v3.0

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gophy's Issues

-tv option in bp

Hello,
In the https://fephyfofum.github.io/gophy/ you mentioned to use -tv option, but when I add it, bp gives not defined error. flag provided but not defined: -tv

Would you please fix it, or other workaround to get list of trees with the conflict, concordance, and uninformative?

I should mention that the option works on mac, but not in the linux cluster. I am not sure why? I have 2 cores in macbook, so prefer to run on cluster.

Thanks
Mohammad

comments in node.go

need to add comments for the additional node.go properties that are not clear (LAD,FAD, etc.)

Can't run the bp

Hello,
I would like to run bp but getting following error. Any idea how to fix it? Thanks

➜  ~ go get github.com/FePhyFoFum/gophy
# github.com/FePhyFoFum/gophy
go/src/github.com/FePhyFoFum/gophy/nuclikeoptimize.go:49:10: settings.FunctionThreshold undefined (type optimize.Settings has no field or method FunctionThreshold)
go/src/github.com/FePhyFoFum/gophy/nuclikeoptimize.go:56:10: settings.FunctionConverge undefined (type optimize.Settings has no field or method FunctionConverge)
go/src/github.com/FePhyFoFum/gophy/nuclikeoptimize.go:107:10: settings.FunctionThreshold undefined (type optimize.Settings has no field or method FunctionThreshold)

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