fgcz / qg

MS queue generator

queueGenerator

shiny::shinyApp(ui = qg::.buildQgUI , server = qg::.buildQgServer) -> qg
## Have a lot of fun!
qg

Install:

https://gitlab.bfabric.org/proteomics/shiny-ms-apps-dockerized

sample input

container	instument	LC
p36104	ASTRAL_1	MCLASS

Motivation:

anno 2010

• fgcz naming convention,
• injecting bfabric sample IDs and order IDs, ...
• automatic linking to meta data in bfabric ...
• on some point we want to have it in bfabric

Challenges

• ((autoQC_user|QC)) - autoQC01, autoQC03, autoQC4; soon: ((autoQC05)), ((autoQC06)), ((autoQC07)), ((autoQC08))
• blanc/clean/wash runs
• plate, e.g., 96WP, / multiplate systems
• LC systems: .eksigent(), .water(), ..., nanoElute() , .vanquish()
• instrument control software, e.g., XCalibur, HyStar
• (block) randomization run order / across plates
• multi order
• acquisition of a sample set multiple times (with different methods, eg. pos and neg mode)
• DIL (metabolomics)
• ...
• Legacy code

See also

https://fgcz-intranet.uzh.ch/tiki-index.php?page=sw.queueGenerator