package naming about rawrr

[tobiasko]

Why not

rawrr

because

https://www.urbandictionary.com/define.php?term=rawrr

It is as close to rawR as possible and solves the naming conflict with CRAN.

[tobiasko]

The easiest way out of this dilemma is to submit rawR to Bioc using a slightly "extended" package name that preserves the onomatopoetic idea. For instance rawrrR. But reading this:

“Package:” field: This is the name of the package. This should match the github repository name and is case sensitive. A package name should be descriptive and not already exist as a current package (case-insensitive) in Bioconductor or CRAN. Avoid names that are easily confused with existing package names, or that imply a temporal (e.g., ExistingPackage2) or qualitative (e.g., ExistingPackagePlus) relationship."

Still makes me think that the check should NOT fail.

[tobiasko]

@cpanse Could you add the complete first command?

[cpanse]

@tobiasko R CMD check rawR_0.1.1.tar.gz

[tobiasko]

Interesting!

> if (!requireNamespace("BiocManager"))
+     install.packages("BiocManager")
Loading required namespace: BiocManager
> BiocManager::install("rawR")
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.3 (2020-02-29)
Installing package(s) 'rawR'
Old packages: 'ape', 'backports', 'bit', 'bit64', 'bookdown', 'boot', 'broom', 'callr', 'car', 'carData', 'class', 'cli', 'clipr',
  'codetools', 'colorspace', 'covr', 'cowplot', 'data.table', 'dbplyr', 'DelayedArray', 'devtools', 'digest', 'doParallel', 'doSNOW',
  'dplyr', 'DT', 'e1071', 'ellipsis', 'foreach', 'Formula', 'fs', 'generics', 'ggforce', 'ggplot2', 'ggpubr', 'git2r', 'glue', 'gplots',
  'gtools', 'haven', 'HDF5Array', 'Hmisc', 'htmlTable', 'htmltools', 'htmlwidgets', 'httpuv', 'httr', 'isoband', 'iterators', 'jsonlite',
  'kableExtra', 'KernSmooth', 'knitr', 'labeling', 'later', 'lattice', 'lme4', 'lmtest', 'lubridate', 'maptools', 'MASS', 'matrixStats',
  'mgcv', 'modelr', 'MSstatsTMT', 'mvtnorm', 'nlme', 'nloptr', 'nnet', 'openssl', 'openxlsx', 'pillar', 'pkgbuild', 'pkgload', 'processx',
  'promises', 'protViz', 'ps', 'purrr', 'quantreg', 'R6', 'raster', 'RcmdrMisc', 'Rcpp', 'RcppArmadillo', 'RCurl', 'readr', 'remotes',
  'reshape2', 'rex', 'rlang', 'rmarkdown', 'roxygen2', 'rprojroot', 'RSQLite', 'rstudioapi', 'rversions', 'rvest', 'S4Vectors', 'sandwich',
  'scales', 'shiny', 'shinyjs', 'sp', 'spatial', 'statmod', 'stringi', 'survival', 'survminer', 'sys', 'testthat', 'tibble', 'tidyr',
  'tinytex', 'usethis', 'vcd', 'vctrs', 'withr', 'xfun', 'xml2', 'zip', 'zoo'
Update all/some/none? [a/s/n]: 
n
Warning messages:
1: package ‘rawR’ is not available (for R version 3.6.3) 
2: Perhaps you meant ‘rawr’ ? 

[cpanse]

Interesting!

> if (!requireNamespace("BiocManager"))
+     install.packages("BiocManager")
Loading required namespace: BiocManager
> BiocManager::install("rawR")
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.3 (2020-02-29)
Installing package(s) 'rawR'
Old packages: 'ape', 'backports', 'bit', 'bit64', 'bookdown', 'boot', 'broom', 'callr', 'car', 'carData', 'class', 'cli', 'clipr',
  'codetools', 'colorspace', 'covr', 'cowplot', 'data.table', 'dbplyr', 'DelayedArray', 'devtools', 'digest', 'doParallel', 'doSNOW',
  'dplyr', 'DT', 'e1071', 'ellipsis', 'foreach', 'Formula', 'fs', 'generics', 'ggforce', 'ggplot2', 'ggpubr', 'git2r', 'glue', 'gplots',
  'gtools', 'haven', 'HDF5Array', 'Hmisc', 'htmlTable', 'htmltools', 'htmlwidgets', 'httpuv', 'httr', 'isoband', 'iterators', 'jsonlite',
  'kableExtra', 'KernSmooth', 'knitr', 'labeling', 'later', 'lattice', 'lme4', 'lmtest', 'lubridate', 'maptools', 'MASS', 'matrixStats',
  'mgcv', 'modelr', 'MSstatsTMT', 'mvtnorm', 'nlme', 'nloptr', 'nnet', 'openssl', 'openxlsx', 'pillar', 'pkgbuild', 'pkgload', 'processx',
  'promises', 'protViz', 'ps', 'purrr', 'quantreg', 'R6', 'raster', 'RcmdrMisc', 'Rcpp', 'RcppArmadillo', 'RCurl', 'readr', 'remotes',
  'reshape2', 'rex', 'rlang', 'rmarkdown', 'roxygen2', 'rprojroot', 'RSQLite', 'rstudioapi', 'rversions', 'rvest', 'S4Vectors', 'sandwich',
  'scales', 'shiny', 'shinyjs', 'sp', 'spatial', 'statmod', 'stringi', 'survival', 'survminer', 'sys', 'testthat', 'tibble', 'tidyr',
  'tinytex', 'usethis', 'vcd', 'vctrs', 'withr', 'xfun', 'xml2', 'zip', 'zoo'
Update all/some/none? [a/s/n]: 
n
Warning messages:
1: package ‘rawR’ is not available (for R version 3.6.3) 
2: Perhaps you meant ‘rawr’ ? 

yes this is the CRAN https://CRAN.R-project.org/package=rawr package

[tobiasko]

I just realized that the cross check with CRAN is done case-INsensitive! "Wer lesen kann ist klar im Vorteil"! ;-)

[tobiasko]

https://support.bioconductor.org/p/p133305/#p133310

[tobiasko]

updates from Martin Morgan:

https://support.bioconductor.org/p/p133305/#p133310

renaming the package will be necessary.

[cpanse]

most intuitive would be then rawFileReader.

[cpanse]

ah it is too boring maybe orbitrap reader

[tobiasko]

Done!