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A public reference implementation of HL7 FHIR Genomics Operations (http://build.fhir.org/ig/HL7/genomics-reporting/operations.html)

Home Page: https://fhir-gen-ops.herokuapp.com/

License: Apache License 2.0

Procfile 0.01% Python 87.58% Jinja 0.20% HTML 0.52% CSS 1.67% TypeScript 10.03%
heroku flask connexion fhir genomics mongodb open-api-v3 pytest python3

genomics-operations's People

Contributors

akrampersad avatar arraxx avatar dependabot[bot] avatar fatemaker254 avatar justinaronson avatar lmckenzi avatar mihaitodor avatar rhdolin avatar rohan-cod avatar yashjanidev avatar

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Forkers

starwalker mihaitodor gauravmauryaios https-github-com-gauravmauryaios fatemaker254 arraxx the-0mnipotent chandanwebshar justinaronson akrampersad gauravwagh1188 cwhite98 karannsharma01 yashjanidev ikarus97 thearyamanc wwz33 harshitpathak528

genomics-operations's Issues

Unit test coverage

Issue:
There are a lot of functions in the common.py file which don't have unit tests. Currently, only the is_int function is tested

Solution:
Unit tests for the other testable functions should be added

Adding parameters for germline and somatic genomicSourceClass

Issue

Adding parameters for germline and somatic genomicSourceClass

Context

Under Subject Genotype Operations the Patient NB6TK328's genotype under finding_subject_haplotype showing same results for both somatic and germline genomicSourceClass parameter.

Solution

Different output should be displayed after selection of either genomic or somatic genomicSourceClass.

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