fraenkel-lab / chipsequtil Goto Github PK
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Collection of utilities for chipseq and short read analysis
Hi Adam,
I'm trying to get map_peaks_to_known_genes
onto galaxy for Fraenkel's lab. That requires that I get the tool into one of galaxy's "tool sheds" which requires that I write up some xml describing the inputs and outputs of the program. There exists a repository called gxargparse
which I think might be a nice shortcut for this. I've installed it and chipsequtil in a vitualenv, and based on what I can tell, I now need to run:
python map_peaks_to_known_genes.py --generate-galaxy-xml
But when I do, I get:
ImportError: No module named chipsequtil
even though I thought I had installed everything properly. Let me know if I'm missing anything or misunderstanding anything greatly. It would be much appreciated!
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