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Long read visualizer for genomics created using D3

Home Page: http://genomeribbon.com

License: MIT License

CSS 1.25% PHP 8.15% JavaScript 86.79% Python 3.81%

ribbon's Introduction

Ribbon

Ribbon gallery

Ribbon is an interactive web visualization tool for viewing genomic alignments of short/long reads or assembled contigs to any reference genome.

Ribbon is available online at genomeribbon.com and can even read large bam files straight from your computer without a local install.

Local deployment

If you need to deploy Ribbon locally, here are the steps:

  1. Install XAMPP on your computer (includes Apache and PHP)

  2. Go to the htdocs folder created during the install. On a Mac, the folder is located at /Applications/XAMPP/htdocs/

    cd /Applications/XAMPP/htdocs/

  3. Clone this repository into the htdocs folder

    git clone https://github.com/marianattestad/ribbon

  4. Then go to a web browser such as Chrome, Firefox, or Safari (Not tested on IE) and type into the url box:

    localhost/ribbon

That is the entire installation process for Ribbon. Don't you love web applications?

ribbon's People

Contributors

marianattestad avatar

Stargazers

Andreas Sjödin avatar

Watchers

James Cloos avatar Wayne Fang avatar

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