fw1121 / standard-raxml Goto Github PK
View Code? Open in Web Editor NEWThis project forked from stamatak/standard-raxml
Home Page: www.exelixis-lab.org
This project forked from stamatak/standard-raxml
Home Page: www.exelixis-lab.org
Standard RAxML version 8.0.0 Compiling under Linux: standard, SSE3 or AVX version? In general you should try to compile the SSE3 version that makes use of capabilities on relativiely recent processors (most Intel or AMD chips not older than 3-4 years). The SSE3 version will run about 40% faster than the non-SSE3 version. If you have a more recently bought processor (within the last 1-2 years), please also try to compile the AVX version which once again uses the capabilities of modern processors better and can be 10-30% faster than the SSE3 version. AVX will work on the Intel i7 (sandy-bridge) series processors as well as on the very recently released AMD Bulldozer systems. Compiling should work out of the box with all reasonably recent vesrion of the GNU gcc and Intel icc compilers. If you want to use icc replace gcc by icc in the Makefiles. Please direct all your RAxML questions to our google group (and only after having used the search function!): https://groups.google.com/forum/?hl=de&fromgroups#!forum/raxml Sequential version: type: "make -f Makefile.gcc" "rm *.o" or "make -f Makefile.SSE3.gcc" "rm *.o" or "make -f Makefile.AVX.gcc" "rm *.o" Pthreads version: type: "make -f Makefile.PTHREADS.gcc" "rm *.o" or "make -f Makefile.SSE3.PTHREADS.gcc" "rm *.o" or "make -f Makefile.AVX.PTHREADS.gcc" "rm *.o" Coarse-grain MPI version: type: "make -f Makefile.MPI.gcc" "rm *.o" or "make -f Makefile.SSE3.MPI.gcc" "rm *.o" or "make -f Makefile.AVX.MPI.gcc" "rm *.o" Hybrid MPI/Pthreads version: Before using this version, please read this paper here: http://sco.h-its.org/exelixis/pubs/Exelixis-RRDR-2010-3.pdf and look at these slides: http://sco.h-its.org/exelixis/Phylo100225.pdf type: "make -f Makefile.HYBRID.gcc" "rm *.o" or "make -f Makefile.SSE3.HYBRID.gcc" "rm *.o" or "make -f Makefile.AVX.HYBRID.gcc" "rm *.o"
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.