KBase Interface for COBRApy
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License: MIT License
KBase Interface for COBRApy
License: MIT License
I install this package on python 3.7.0 with pip install cobrakbase
.
But when I import it import cobrakbase
, an error happend.
c:\Users\vickenlee\AppData\Local\Programs\Python\Python37\lib\site-packages\cobrakbase\Workspace\WorkspaceClient.py in
10 # the following is a hack to get the baseclient to import whether we're in a
11 # package or not. This makes pep8 unhappy hence the annotations.
---> 12 from cobrakbase.Workspace.baseclient import BaseClient as _BaseClient
13 #try:
14 # # baseclient and this client are in a package
...
--> 678 raise KeyError(key) from None
679 return self.decodevalue(value)
680
KeyError: 'HOME'
fva_sol is the object returned by cobra.flux_analysis import flux_variability_analysis
essential_genes is a set containing the id's of the essential genes.
Ones essential genes is added to the builder object. A simple function could be added:
def gene_essential(self, gene_id):
return gene_id in self.essential_genes
Hi! I know its probably not the right place to ask this, but where i can get a kbase toke api?
Thanks!
Hello @Fxe !
I receive the attached error when I attempt to install the package. Is the error from an incompatible numpy
version (I am operating the numpy
version 1.23.5
) or the problem elsewhere?
Andrew
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