gear-genomics Goto Github PK

ancient

Ancestry inference with convolutional neural networks

apps-page

GEAR home page

bgen

Barcode Generator

bistro

bistro: barcode distribution

dicey

In-silico PCR, primer design and padlock design for in-situ sequencing

gearlog

halo

haplotype processor

indigo

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

libs

The libraries and fonts commonly used in the gear applications

maze

maze: match visualizer | visually align dna sequences using exact matches

padlock

Design padlock probes for in-situ sequencing

pearl

Patching references via trace assemblies

primer3plus

Primer3Plus is an advanced web interface for primer3.

rdml-tools

A collection of web applications to visualize, edit and validate RDML files.

sabre

Sequence Alignment Browser

sage

Sanger Trace Alignment

saint

[WIP] saint (similarity hunter): Rapid DNA similarity search against entire genomes.

salt

Sequence Alignment Tool

silica

In-silico PCR amplification on complete genomes

teal

Sanger Trace Viewer

terms-of-use

tracy

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

verdin

Variant Primer Design

wily-dna-editor

The Wily-DNA-Editor is a browser tool for plasmid assembly, reverse complements DNA, translates to protein code and calculates restriction digests maps.