Comments (4)
I see. I will fix it. Thanks. I was able to read these matrices in R correctly before, so never thought an extra tab would be a problem.
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@xiangzhou It looks like the kinship files still have a tab or space at the end of each line. Can you fix this?
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Not only does the kinship file has this redundant tab at the end of each line, but also happens in the eigenU.txt file in the outputs of eigen-decomposition.
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Should be fixed now.
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Related Issues (20)
- Parsing input file '' failed in function AnalyzeBimbamGXE
- Enforce failed for number of analyzed individuals equals 0. in src/param.cpp at line 2073 in ProcessCvtPhen HOT 2
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- very low number of analyzed SNPs/var
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- gsl: newton.c:88: ERROR: function value is not finite 3.08%
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- WARNING: Brent did not converge
- Why the diagonal of relatedness matrix is not equal to 1 or a constant value? HOT 1
- The problem of filtering snp parameters
- ERROR: Enforce failed for Problem reading FAM file (phenotypes do not match geno file) in src/gemma_io.cpp at line 600 in ReadFile_fam GEMMA 0.98.3 (2020-11-28) by Xiang Zhou and team (C) 2012-2020
- Identical P-Values at end of run HOT 1
- BIMBAM format (preferred)
- ##ERROR: FAILED: Parsing input file 'mikk_small_hapVariants_updated_noheaders.csv' failed in function ReadFile_geno in src/gemma_io.cpp at line 744, for GEMMA 0.98.5 (2021-08-25) by Xiang Zhou, Pjotr Prins and team (C) 2012-2021
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