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eccotour.jl's Issues

Understanding rotate_uv

The rotate_uv function is not identical to the UVtoUEVN in MeshArrays.jl. However, rotate_uv obeys conservation of volume better than UVtoUEVN. One main difference is that UVtoUEVN interpolates the velocities to the grid center before rotating. Whether or not this a necessary step is still in question.

ECCOtour can't be added to default environment due to SigmaShift

"""
(@v1.6) pkg> add https://github.com/ggebbie/ECCOtour.jl
Updating git-repo https://github.com/ggebbie/ECCOtour.jl
Updating registry at ~/.julia/registries/General
Resolving package versions...
ERROR: Unsatisfiable requirements detected for package SigmaShift [29a8b8bc]:
SigmaShift [29a8b8bc] log:
├─SigmaShift [29a8b8bc] has no known versions!
└─restricted to versions * by ECCOtour [414fb998] — no versions left
└─ECCOtour [414fb998] log:
├─possible versions are: 0.1.11 or uninstalled
└─ECCOtour [414fb998] is fixed to version 0.1.11
"""

NetCDF error when multithreading 

[268256] signal (11.1): Segmentation fault
in expression starting at none:1
NC_create at /home/gebbie/.julia/artifacts/4a6fe8c6eda7f19d80afb858eb9f7cbe312f1453/lib/libnetcdf.so (unknown line)
nc__create at /home/gebbie/.julia/artifacts/4a6fe8c6eda7f19d80afb858eb9f7cbe312f1453/lib/libnetcdf.so (unknown line)
nc_create at /home/gebbie/.julia/artifacts/4a6fe8c6eda7f19d80afb858eb9f7cbe312f1453/lib/libnetcdf.so (unknown line)
nc_create at /home/gebbie/.julia/packages/NetCDF/7hOe9/src/netcdf_c.jl:34
nc_create at /home/gebbie/.julia/packages/NetCDF/7hOe9/src/netcdf_helpers.jl:110 [inlined]
#create#48 at /home/gebbie/.julia/packages/NetCDF/7hOe9/src/NetCDF.jl:772
create at /home/gebbie/.julia/packages/NetCDF/7hOe9/src/NetCDF.jl:763 [inlined]
#create#49 at /home/gebbie/.julia/packages/NetCDF/7hOe9/src/NetCDF.jl:854 [inlined]
create at /home/gebbie/.julia/packages/NetCDF/7hOe9/src/NetCDF.jl:854
unknown function (ip: 0x7f650e3ff660)
_jl_invoke at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/gf.c:2894 [inlined]
ijl_apply_generic at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/gf.c:3076
jl_apply at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
do_apply at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/builtins.c:768
#create#53 at /home/gebbie/.julia/packages/NetCDF/7hOe9/src/NetCDF.jl:1020
create at /home/gebbie/.julia/packages/NetCDF/7hOe9/src/NetCDF.jl:1019 [inlined]
#nccreate#71 at /home/gebbie/.julia/packages/NetCDF/7hOe9/src/NetCDF.jl:1268
_jl_invoke at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/gf.c:2894 [inlined]
ijl_apply_generic at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/gf.c:3076
jl_apply at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
do_apply at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/builtins.c:768
nccreate at /home/gebbie/.julia/packages/NetCDF/7hOe9/src/NetCDF.jl:1195
_jl_invoke at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/gf.c:2894 [inlined]
ijl_apply_generic at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/gf.c:3076
write at /home/gebbie/projects/ECCOtour.jl/src/ECCOtour.jl:1501
unknown function (ip: 0x7f650e3f7945)
_jl_invoke at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/gf.c:2894 [inlined]
ijl_apply_generic at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/gf.c:3076
macro expansion at ./timing.jl:279 [inlined]
macro expansion at /home/gebbie/projects/ECCOonPoseidon/scripts/state2sigmaregularpoles.jl:81 [inlined]
#215#threadsfor_fun#3 at ./threadingconstructs.jl:215
#215#threadsfor_fun at ./threadingconstructs.jl:182 [inlined]
#1 at ./threadingconstructs.jl:154
unknown function (ip: 0x7f650e381522)
_jl_invoke at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/gf.c:2894 [inlined]
ijl_apply_generic at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/gf.c:3076
jl_apply at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/julia.h:1982 [inlined]
start_task at /cache/build/builder-amdci5-1/julialang/julia-release-1-dot-10/src/task.c:1238
Allocations: 4874807464 (Pool: 4861515777; Big: 13291687); GC: 1638

mv example scripts to ECCOonPoseidon

Scripts found in ECCOtour.jl/examples including spice_propagation_plot and extract_nino34 need to be moved to ECCOonPoseidon and updated for DrWatson.

`using` statements fail at first usage

Cora and I have seen problems with the using statements at the beginning of a script, for example, filter_interannual.jl. First, we made sure that the Pkg.status() returns the proper packages, not just pointing to a local directory. If problems persist, we found that updating the packages may help (i.e., Pkg.update()).

`var2regularpoles` slow

take 350 s

used to take 100 s

  • garbage collection
  • julia 1.10
  • multi-threading
  • deepcopy
  • code interaction with ECCOonPoseidon

Make statistics in `allstats` and `faststats` more Julian

maximum and minimum have been removed in ECCOtour because they can be handled by the mask function in MeshArrays.

Other statistics like mean and std require filtering out land values. They currently work, but the functions have a syntax that is not Julian. They also re-do much of the work in ECCOtour.mask. Consider updating this code.

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