WorldOceanAtlas KeyError: key "file_name" not found about physocean.jl

[Alexander-Barth]

Do you have a file called out2.html ? I should contain a html input tag with the name file_name. Is this the case?

[ctroupin]

Yes, out2.html is there, but no file_name in it. But ok, I think I know why, probably the data selection was empty (too small domain and period).
I check again.

[ctroupin]

ok, with a larger domain it goes further, but now:

XBT is now available
PFL is now available
MRB is now available
...
MethodError: no method matching Array{String,1}(::Int64)
Closest candidates are:
  Array{String,1}() where T at boot.jl:413
  Array{String,1}(!Matched::UndefInitializer, !Matched::Int64) where T at boot.jl:394
  Array{String,1}(!Matched::UndefInitializer, !Matched::Int64...) where {T, N} at boot.jl:400
  ...

Stacktrace:
 [1] extract(::Array{String,1}, ::String) at /home/ctroupin/.julia/packages/PhysOcean/Xi3Gc/src/WorldOceanDatabase.jl:32
 [2] download(::StepRangeLen{Float64,Base.TwicePrecision{Float64},Base.TwicePrecision{Float64}}, ::StepRangeLen{Float64,Base.TwicePrecision{Float64},Base.TwicePrecision{Float64}}, ::Array{Date,1}, ::String, ::String, ::String) at /home/ctroupin/.julia/packages/PhysOcean/Xi3Gc/src/WorldOceanDatabase.jl:324
 [3] top-level scope at In[7]:1

the data from WOD are there (.tar.gz) but the extraction is not performed.

[Alexander-Barth]

Does it work now with the latest commit?

[ctroupin]

Now I have:

UndefVarError: is_windows not defined
...

but I think it's solved by is_windows by Sys.iswindows().
The extraction now works but then

CTD is now available

  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 50644  100 50644    0     0  32657      0  0:00:01  0:00:01 --:--:-- 32652
┌ Info: Extracting /home/ctroupin/Downloads/WOD/TestGhir5/CTD
└ @ PhysOcean.WorldOceanDatabase /home/ctroupin/.julia/packages/PhysOcean/OU0LA/src/WorldOceanDatabase.jl:41

MethodError: no method matching replace(::String, ::String, ::String)
Closest candidates are:
  replace(::String, !Matched::Pair{#s55,B} where B where #s55<:AbstractChar; count) at strings/util.jl:414
  replace(::String, !Matched::Pair{#s52,B} where B where #s52<:Union{Tuple{Vararg{AbstractChar,N} where N}, Set{#s49} where #s49<:AbstractChar, AbstractArray{#s50,1} where #s50<:AbstractChar}; count) at strings/util.jl:419
  replace(::String, !Matched::Pair; count) at strings/util.jl:423
  ...

Stacktrace:
 [1] (::getfield(PhysOcean.WorldOceanDatabase, Symbol("##1#2")){Array{String,1},Array{String,1}})(::Int64) at ./none:0
 [2] iterate at ./generator.jl:47 [inlined]
 [3] collect at ./array.jl:619 [inlined]
 [4] macro expansion at ./logging.jl:309 [inlined]
 [5] extract(::Array{String,1}, ::String) at /home/ctroupin/.julia/packages/PhysOcean/OU0LA/src/WorldOceanDatabase.jl:41
 [6] download(::StepRangeLen{Float64,Base.TwicePrecision{Float64},Base.TwicePrecision{Float64}}, ::StepRangeLen{Float64,Base.TwicePrecision{Float64},Base.TwicePrecision{Float64}}, ::Array{Date,1}, ::String, ::String, ::String) at /home/ctroupin/.julia/packages/PhysOcean/OU0LA/src/WorldOceanDatabase.jl:327
 [7] top-level scope at In[5]:1

[Alexander-Barth]

Can you try to commit the changes? If you are in doubt what to change, you can also run the code under Julia 0.7. The depreciation warnings will guide you what the new syntax is. It would be good however, to keep the code compatible with Julia 0.6, 0.7 and 1.0. You might want to take a look in DIVAnd.jl for how you can keep the code compatible with the 3 versions.

[Alexander-Barth]

This resource might be helpful:
https://docs.julialang.org/en/v0.7.0/NEWS/
https://github.com/JuliaLang/Compat.jl

Compat.jl is the equivalent of python six module allowing you to run more easily code under multiple Julia versions.

[ctroupin]

yes, would be better to keep it compatible with other versions, the Compat.jl doc is not very explicit to me
for example:

@compat ...compat syntax...

I don't see that in DIVAnd, but I'll try some shorter examples to see how it's supposed to work.

Edit: ok, think I got it, it now words with 1.0.0 and 0.6.4.