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crispedit

crispr-nf

Pre-processing of multiplexed CRISPR / shRNA Screens

crispresso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

dagr

A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs

data-engineering

datapasta

On top of spaghetti, all covered in cheese....

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

demux-nf

A nextflow demux pipeline

dna-seq-varlociraptor

Variant detection with Delly and Freebayes, followed by statistical assessment with Varlociraptor

dnanexus-example-applets

Source code for some simple file-based applets

dockerfold

dolphinnext

A graphical user interface for distributed data processing of high throughput genomics

epidisco

Personalized cancer epitope discovery and peptide vaccine prediction pipeline

etcd

Distributed reliable key-value store for the most critical data of a distributed system

fend-project-memory-game

frontend-nanodegree-arcade-game

genreads1

gnetsanet.github.io

headshots-starter

idr

IDR

ignite

Mirror of Apache Ignite

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

insilicoseq

:rocket: A sequencing simulator

integrate-neo

isovar

Abundance quantification of distinct transcript sequences containing somatic variants from cancer RNAseq

iterm2-color-schemes

Over 200 terminal color schemes/themes for iTerm/iTerm2 (with ports to Terminal, Konsole, PuTTY, Xresources, XRDB, Remina, Termite, XFCE, Tilda, FreeBSD VT, Terminator, Kitty, and MobaXterm)

jasmine-feedreader

ketrew

Keep Track of Experimental Workflows

lazygit

simple terminal UI for git commands

ldlc