grassking100 / deep_gene_annotator

The related code of the master thesis, "Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana"

DeepGeneAnnotator: A tool to annotate the gene in the genome

The master thesis of the "Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana" is shown in here.

Figure 1. The pipeline of the deep learning model prediction



Figure 2. The architecture for the feature block



Figure 3. The architecture for the relation block



Figure 4. The hierarchy inference method



Figure 5. The hierarchy loss formula



Figure 6. The augementation method



Figure 7. The boundary post-processing procedure



Figure 8. The comparison between proposed method with Augustus

Reference

If you want to cite the DeepGeneAnnotator, please consider citing as the following:

Wang, Ching-Tien. (2020). Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana. 
(Master thesis), National Taiwan University, Retrieved from https://dx.doi.org/10.6342/NTU202002143