gtca / mofaplus-shiny

Interactive MOFA+

Hi there 👋

mofaplus-shiny's Issues

Add plot_data_heatmap

Add plot_data_heatmap for easier interpretation

Add scatter plots in latent factors dimensions

Add embeddings tab with non-linear embeddings

UMAP and/or t-SNE might be a useful (and a familiar) way to get the overview of the data.

One of the ways to incorporate that would be to create a tab with UMAP/tSNE embeddings if they are present in the model file or to run it from the browser if not. The colouring of the embedding could be factor values.

Add factors correlation

Add plot_factor_cor() plot to make it easier to interpret and compare factors.

Add a plot with top loadings

Add plot_top_weights() plot to make it easier to interpret factors.

Run the app on custom context path

I am accessing the app behind a load balancer and I need to serve it on the context path /shiny/mfoa

if I re-write /shiny/mfoa with / as currently i have to do this becuase it is serving on /

then I lose the CSS and page is not rendering properly.

Is there a way to modify/change the app or dockerfile to serve it natively on /shiny/mfoa

Add variance explained plots

Add factors violin plots

Improve variance explained plot

For the better variance explained representation, add an option to set min_r2 and max_r2 and use the default colour palette.

Add sample models to explore

Possible ones are PBMC datasets from 10X Genomics, Tabula Muris.

Export plots

It would be useful to implement an export function to get a PDF file with a plot for every tab.