guparan / pulsephysiology

[WIP] GSoC project binding SOFA and Pulse Engine

Inspired from https://github.com/sofa-framework/sofa/tree/master/applications/plugins/CImgPlugin

Build instructions

• Build SOFA master and install it in a separate directory, let's say /home/user/sofa/install

• Build Pulse and install it in a separate directory, let's say /home/user/pulse/install

• Create some build dir on the same level as the plugin: PulsePhysiology-build

• cd into this build dir and run cmake-gui ../PulsePhysiology

• Add a variable CMAKE_PREFIX_PATH and set it to both SOFA and Pulse install dirs.
  In the example case: CMAKE_PREFIX_PATH=/home/user/sofa/install;/home/user/pulse/install

• Also set CMAKE_INSTALL_PREFIX to the build dir. In the example case : CMAKE_INSTALL_PREFIX= /PulsePhysiology-build

• Configure + Generate

• Build the plugin

Using the built plugin

• Various patient states are available in ./states directory inside PulsePhysiology-build. The default is [email protected] but can be modified while calling the LoadStateFile() function.

• cd into the build directory : PulsePhsyiology-build

• Type command make followed by make install

• Now to run simulation for a particular condition, run command bin/PulsePhysiology condition

• Lets say you want to run simulation for Pulmonary Function, the command will be bin/PulsePhysiology PulmonaryFunctionTest"

• Some of the other conditions are : AirwayObstruction Asthma BrainInjury CPR TensionPneumothorax

• The data from the simulations is stored in the /PulsePhysiology-build with the name as condition.log