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.github-cytomining

A special GitHub repository for setting the Cytomining organization profile and default community health files.

2018-dsb-analysis

Analysis of results of the Data Science Bowl 2018

2018_04_20_rosetta

Translating morphology data across single-cell modalities (CZI)

2018_05_30_resistancemechanisms_kapoor

Predicting pharmacodynamic responses to cancer drugs using cell morphology

2020-06-01-evidence-of-state-switching-in-single-cell-drug-response-broad

aspera-client-docker

Docker image for downloading IDR datasets

awesome

😎 Awesome lists about all kinds of interesting topics

awesome-cv

Awesome CV is LaTeX template for your outstanding job application

awesome-cytodata

A curated list of awesome cytodata resources

betavaeimputation

bioconda-recipes

Conda recipes for the bioconda channel.

bioconda-utils

Utilities for building and managing bioconda recipes

brca_lowstage_dmgrs

The repository stores the analytical code for the pre-release of the manuscript titled "Tumor subtype and cell type independent DNA methylation alternations reveals twelve genes associated with low stage breast carcinoma".

bsub-helper

For helping with bjob submissions on an LSF cluster

cancer-data

TCGA data acquisition and processing for Project Cognoma

ccdl_header

Code to generate header image for Childhood Cancer Data Lab website

cell-health

Predicting Cell Health with Morphological Profiles

cell-health-data

Data processing for the Cell Painting data from the Cell Health experiments

cell-image-classification

Cell image classsification with neural networks (MLP, ConvNet) and other statistical ML models (SVM, LDA, LR, etc.).

cell-morphology-power-analyses

Power analyses for cell morphology readouts

cell-painting-batch-effects

cell-painting-vae

cell_state_papers

Cataloging papers on cell state - Data, experiments, methods, and theory

cfret_data

Data processing for CFReT pilot images.

computational-reagents

Rigor, Reproducibility, Transparency, and Reagent Validity for Computational Biologists

cytominer

Methods for Image-Based Cell Profiling

cytominer-database

A package for storing morphological profiling data.

cytominer-eval

Common Evaluation Metrics for DataFrames

cytominer-transport

cytominer_database-feedstock

A conda-smithy repository for cytominer_database.