Name: Mahendra Gaur
Type: User
Company: Siksha 'O' Anusandhan (Deemed to be University)
Bio: I am a Computational Biologist. Doing work NGS data analysis using various tools.
Twitter: mahiGaur85
Location: Bhubaneswar, Odisha, India
Mahendra Gaur's Projects
Add missing residue to pdb files
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
some useful scripts for working with genomics and sequencing data
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
Container for xcms + various R scripts
Automatically exported from code.google.com/p/ea-utils
script to analysis the fastq files using R
A Collection Of Useful BASH Scripts.
This repository contains a collection of templates for various documents commonly used in scientific research and publication.
MLST informatinon of all avilable genomes (Chromosome, Complete, Scaffolds and Contigs) of Klebsiella pnemoniae at NCBI ftp. The mlst of all assemblies is predicted by mlst v2.11 (https://github.com/tseemann/mlst).
A step-by-step tutorial for analyzing molecular dynamics (MD) simulations using GROMACS.
Melbourne Bioinformatics documentation in markdown format
Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
Pipeline to process UPLC-MS/MS data with XCMS
An automated Snakemake workflow for comprehensive taxonomic and functional analysis of microbiome sequences. The pipeline utilizes DIAMOND for rapid alignment of short reads or contigs or ORFs and MEGAN for subsequent taxonomic and functional interpretation of the alignment results.
R Script to Test, Install and load required packages
Statistical Analysis of RNA-Seq Tools
Command-line program to download videos from YouTube.com and other video sites