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add-missing-residues-to-pdb-files

Add missing residue to pdb files

basicvariantcalling

biojupies

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

bioscripts

some useful scripts for working with genomics and sequencing data

cats

coi_ncbi_2018

This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904

container-xcms

Container for xcms + various R scripts

ea-utils

Automatically exported from code.google.com/p/ea-utils

fastq_analysis_using_r

script to analysis the fastq files using R

important_bash_scripts

A Collection Of Useful BASH Scripts.

important_scientific_templates

This repository contains a collection of templates for various documents commonly used in scientific research and publication.

indexerror-cannot-do-a-non-empty-take-from-an-empty-axes-in-metamic

kpneumoniae_mlst_database

MLST informatinon of all avilable genomes (Chromosome, Complete, Scaffolds and Contigs) of Klebsiella pnemoniae at NCBI ftp. The mlst of all assemblies is predicted by mlst v2.11 (https://github.com/tseemann/mlst).

mds_analysis

A step-by-step tutorial for analyzing molecular dynamics (MD) simulations using GROMACS.

melbioinf_docs

Melbourne Bioinformatics documentation in markdown format

metabolomics2018

Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.

metabolomics_pipeline

Pipeline to process UPLC-MS/MS data with XCMS

microbiome_analysis_diamond_megan_pipeline

An automated Snakemake workflow for comprehensive taxonomic and functional analysis of microbiome sequences. The pipeline utilizes DIAMOND for rapid alignment of short reads or contigs or ORFs and MEGAN for subsequent taxonomic and functional interpretation of the alignment results.

r-function

R Script to Test, Install and load required packages

r_basics

sartools

Statistical Analysis of RNA-Seq Tools

statistical_learning_basics

youtube-dl

Command-line program to download videos from YouTube.com and other video sites