Comments (17)
This ERDDAP dataset will be generated by querying the Hakai database for the nutrient data with a filter on only the approved dataset.
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@jdelbel We would need to create a Metadata record specific to the Hakai Chlorophyll data here.
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Sure, you can have a look at the CTD provisional dataset form
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This dataset will essentially be a link to the endpoint /eims/views/output/chlorophyll
on the database with a filter on the flags (AV, potentially SVC) and maybe specific sites. Finally, we'll need to pivot the data on the filter variable.
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@jdelbel Here's a proposition, we'll go ahead with setting up the ERDDAP dataset, and filter the data as of now either all or just SVC and AV data. This dataset will be available temporarily on the development erddap.
You'll be able to easily review the final result. Once you are happy with the data itself available on ERDDAP, we can push it to the production server.
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@jdelbel I made a first draft of a QCing notebook for the Chlorophyll-a data. Very preliminary, but that's something to work with:
https://colab.research.google.com/gist/JessyBarrette/4cdb8a41f0bb03c7d5d7a65a6e7dd48d/jessy-run-hakai-nutrients-tests.ipynb
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Due to questionable historical data calibration, we will omit as of now the data collected prior to ~2018. @jdelbel please provide the exact at which we should start presenting the data.
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The CIOOS metadata form is now available here:
https://cioos-siooc.github.io/metadata-entry-form/#/en/pacific/7U7b8oPpeTN6gjvXlUCTGJr5pga2/-MadZvZJ4ZeikpCgRcV8
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Pheao pigments are still missing a standard_name, thanks to @timvdstap it's in the process. We'll update the Hakai Chlorophyll dataset to reflect that once the standard_name mass_concentration_of_phaeopigments_in_sea_water is available.
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@jdelbel the initial version of the Chlorophyll dataset is available here:
https://goose.hakai.org/erddap/tabledap/HakaiChlorophyllSampleResearch.html
Let me your thoughts!
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@jdelbel we would need to specify within the CIOOS record in the title the type of dataset it is Provisional/Research
Same applies to the provisional dataset
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@jdelbel
The Research dataset erddap and forms are now available here for final revision:
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Metadata record was moved to the Hakai CKAN https://cioos-siooc.github.io/metadata-entry-form/#/en/hakai/7U7b8oPpeTN6gjvXlUCTGJr5pga2/-MadZvZJ4ZeikpCgRcV8
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@jdelbel a DOI is now associated with the Chlorophyll Research dataset https://doi.org/10.21966/wsvt-ew96
I added the DOI to the metadata form and also added a placeholder for the ERDDAP dataset. The link will be broken until we make available the dataset on the production server. I still need to add the DOI to the ERDDAP dataset itself too.
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Related Issues (20)
- Hakai Sentinel Temperature Data HOT 1
- Update the different NCEI submitted datasets from OA is reflected on ERDDAP HOT 2
- Connect Hakai CTD Profile Datasets to the Hakai Database HOT 1
- ERDDAP handling of ctd.qartod_flag_type HOT 4
- Hakai Watersheds Weather Stations
- Hakai Watersheds Streams
- Nature Trust CTD Data Provisional/Research datasets HOT 1
- Parks Canada CTD Data Provisional/Research datasets HOT 1
- Skeena River Fisheries CTD Data Provisional/Research datasets HOT 1
- github action tests HOT 1
- Update hakai-datasets to latest and greatest HOT 1
- Hakai ERDDAP is sending notifications to info at cioospacific.ca
- New ERDDAP Dataset: Hakai HPLC dataset Research dataset
- ...
- Algae Explorer Sentinel datasets daily and 8 day datasets HOT 1
- BamfieldBoL remote station new dataset HOT 6
- Decide which repo will be base repo for Hakai Data Mob. tasks and issues HOT 5
- [Issue]: SewardBoL view is not available and is breaking the creation of the different erddap views. HOT 1
- KC Buoy DO data is missing HOT 2
- Hakai Goose server is unstable HOT 18
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