hanngocho / isbatch

Hierarchical batch plugin for ImageJ

Welcome to iSBatch

iSBatch is a Java-based plugin for ImageJ (version 1.49d) or 
its distribution Fiji. iSBatch is designed for quick evaluation
of analysis pipelines and visual exploration of datasets. It is 
distributed under an open open-source license
(GNU General Public License, version 3). The plugin handles the data
in a hierarchical fashion based on a source folder
containing all data and little guidance provided by the user. 
The software is designed for rapid exploration of large datasets
and it includes an internal SQLite database (http://sqljet.com/) for convenience.

Release and Night Build

iSBatch development is in constant and active develpment! Your feedback is important! Check out the last release or try the very last version downloading the Nightly build

Last Release

Night Build

Installation

- Copy the iSBatch.jar file to the ImageJ/Plugins folder
- Go to Help>Refresh Menus or (better) restart ImageJ.
The menus will automatically appear as "Single Molecule Biophysics".

Check the manual here.

The menus will automatically appear as "Single Molecule Biophysics".

Disclaimer

iSBatch  Copyright (C) 2015  
Victor E. A. Caldas -  v.e.a.caldas at rug.nl
C. Michiel Punter - c.m.punter at rug.nl

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.

Contact us!

Contributing

1. Fork it!
2. Create your feature branch: git checkout -b my-new-feature
3. Commit your changes: git commit -am 'Add some feature'
4. Push to the branch: git push origin my-new-feature
5. Submit a pull request :D

• If you are in the list of collaborators, follow this video: https://www.youtube.com/watch?v=VL3PKLHuWtk The video teaches you how to proper import the code and develop into Eclipse.

To solve issues:

• https://www.youtube.com/watch?v=KfeqnernMmE

• https://www.youtube.com/watch?v=r5C6yXNaSGo

Those two movies are a bit redudant but are two points of view. It teaches you how to commit and merge properly.

History

TODO: Write history

Credits

TODO: Write credits

License

https://github.com/SingleMolecule/iSBatch/blob/master/iSBatch/License

##Issues

If you find a bug or want a new feature you can ask in the Issues section on github.

If you wish to submit a bug, issue, or feature request, then you can find the issue tracker here and you can create an issue here. Note that there are several details which are very important to include.

Bug Reports

Provide the following information:

1. Your operating system (and version)
2. The version of Scriptish you are using
3. Your language and/or locale (e.g. "en-US")
4. Clear steps to reproduce the bug.
5. Any error messages seen in the Error Console
6. A description of what you expected to happen
7. A description of what actually happened

Note

IN NO EVENT SHALL THE AUTHORS ARE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF THE AUTHORS WERE BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. THE AUTHORS SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE SOFTWARE PROVIDED HEREUNDER IS ON AN "AS IS" BASIS, AND THE AUTHORS HAVE NO OBLIGATIONS TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.