healthbioscienceideas / sdc-bids-intromri

Introduction to MRI and BIDS

Introduction to Working with MRI Data in Python

An introduction to working with magnetic resonance imaging (MRI) data in Python.

About the Lesson

This lesson teaches:

• a (re?) introduction to MR nomenclature - with BIDS
• how neuroimaging data is stored
• "converting" your data to BIDS
• BIDS apps
• queueing up neuroimaging pipelines

Episodes

#	Episode	Time	Question(s)
1	Neuroimaging Fundamentals	30	What are the common neuroimaging modalities?
2	Anatomy of a NIfTI	30	How is MRI data organized in a NIfTI file?
3	Brain Imaging Data Structure	30	How can I organize my study?
4	Open MRI Datasets	30	How can I download and query an MRI dataset?

Contributing

We welcome all contributions to improve the lesson! Maintainers will do their best to help you if you have any questions, concerns, or experience any difficulties along the way.

We'd like to ask you to familiarize yourself with our Contribution Guide and have a look at the more detailed guidelines on proper formatting, ways to render the lesson locally, and even how to write new episodes.

Please see the current list of issues for ideas for contributing to this repository. For making your contribution, we use the GitHub flow, which is nicely explained in the chapter Contributing to a Project in Pro Git by Scott Chacon. Look for the tag . This indicates that the maintainers will welcome a pull request fixing this issue.

Maintainer(s)

Current maintainers of this lesson are

• Michael Joseph
• Jerrold Jeyachandra

Authors

A list of contributors to the lesson can be found in AUTHORS

License

Instructional material from this lesson is made available under the Creative Commons Attribution (CC BY 4.0) license. Except where otherwise noted, example programs and software included as part of this lesson are made available under the MIT license. For more information, see LICENSE.

Citation

To cite this lesson, please consult with CITATION