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CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components

License: GNU General Public License v3.0

JavaScript 68.49% HTML 26.23% CSS 3.21% CoffeeScript 2.08%

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cellnetvis's Issues

Replace D3.js with PIXI.js

PIXI will split the complexity of computing the graphics and layout algorithm by the processor only. It uses OpenGL - WebGL - when it is available, otherwise it uses Cavas, which is faster than the D3.js SVG.

This means we may allow the user to choose a bigger diagram for a larger network, larger than it supports now.

Loading user's cell diagram - personalize SVG diagram

CellNetVis uses Javascript to select items from the SVG by ID.
Any diagram with valid IDs should work.

Important:

  • Each type of region has its own placement algorithm (constraint), therefore the hierarchical structure of the cell must be validated when the user uploads a custom diagram.

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