This repository contains code for Recursive 3D Segmentation of Shoulder Joint with Coarse-scanned MR Image.
The data for training the network can not be published by the regulation of clinics and Patient Privacy laws.
Please contact:
- * Kang Li [email protected]
- Xiaoxiao He [email protected]
- Chaowei Tan [email protected]
- "*" for the corresponding author
- SimpleITK
- keras
- nibabel
- pytables
- nilearn
- nipype
- tqdm
Install ANTs N4BiasFieldCorrection and add the location of the ANTs
binaries to the PATH environmental variable.
$ export PYTHONPATH=${PWD}:$PYTHONPATH
python preprocessing.py
python auto-augmentation.py