hierakonpolis / rathippocampusgeometry

Prognostic biomarkers for post-traumatic epileptogenesis derived from the hippocampal position and orientation

In this repository you can find the python functions used to process the data, a rendering of our geometric construction in blender, and pickled savefiles containing results from our processed data. For access to the dataset itself, please reach out to the authors directly.

Files:

• (EB/ET)_expanded_results.p: extracted features for the EpiBioS4Rx/EPITARGET datasets
• OrientUtils.py: scripts used to process the data
• environment.ywm: conda environment used to process the data
• example_construction.blend: 3D visualization of our geometric construction for a sham-operated rat

Acknowledgements

We thank Mr. Jarmo Hartikainen, Mrs. Merja Lukkari and Mr. Michele Allori for their excellent technical assistance. This study was supported by The Medical Research Council and Natural Science and Engineering Research Council of the Academy of Finland (Grants 272249, 273909, 2285733-9, 298007, 316258), The Sigrid Juselius Foundation, the European Union’s Seventh Framework Programme (FP7/2007-2013) under grant agreement n°602102 (EPITARGET), by the National Institute of Neurological Disorders and Stroke (NINDS) Center without Walls of the National Institutes of Health (NIH) under Award Number U54NS100064 (EpiBioS4Rx), by grant S21770 from the European Social Fund, and by grant 65211916 from the North Savo Regional Fund (RDF).