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hnishi's Projects

projenishi icon projenishi

projection into PC space with a PCA eigenvector and average.

provis icon provis

Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."

pseudodih icon pseudodih

calculate pseudo dihedral of all pairs of CA atoms in 210-222 in ma2/ab10

quatnishi icon quatnishi

Superposition by quaternion and RMSD calculation

remd_nishi icon remd_nishi

Replica exchange molecular dynamics (REMD) simulation suite in Gromacs v4.6.6

rmsfnishi icon rmsfnishi

calculate RMSF (Root Mean Square Fluctuation)

sample_trtis icon sample_trtis

TensorRT Inference Serverを色々使ってみるリポジトリ

surveys icon surveys

機械学習名古屋勉強会 研究会用リポジトリ

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