huangziyan11111 Goto Github PK

hps

High Performance C++11 Serialization Library

icnv

Integrated copy number variation detection toolset

install_aspera_connect

Install latest version of Aspera Connect and show example how to use it for downloading sequening data.

javascript

JavaScript Style Guide

ltr_finder_parallel

A parallel wrapper for LTR_FINDER

ltr_retriever

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

ltrdetector

macs

MACS -- Model-based Analysis of ChIP-Seq

mgescan

A Galaxy based system for identifying retrotransposons in genome

mikado

Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data and to select the best models in each locus.

mitofyx

some light experimentation on mitofy

mitoz

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

mosaic

MOSAIC

mutatex

scripts and facilities for in-silico mutagenesis with FoldX

newick_utils

shell tools for processing phylogenetic trees

ninja

Nearly Infinite Neighbor Joining Application

novoplasty

NOVOPlasty - The organelle assembler and heteroplasmy caller

ntjoin

🔗Genome assembly scaffolder using minimizer graphs

opam

opam is a source-based package manager. It supports multiple simultaneous compiler installations, flexible package constraints, and a Git-friendly development workflow.

pacasus

Correction of palindromes in long reads from PacBio and Nanopore

pga

Plastid Genome Annotator

phylocsf

Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions

picrust2

Code, unit tests, and tutorials for running PICRUSt2

plotbamcoverage

porechop

adapter trimmer for Oxford Nanopore reads

povray

The Persistence of Vision Raytracer: http://www.povray.org/

proteinviewer

Prototype program to display protein structures in 3D. Uses Java and LWJGL.

pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

qiime-default-reference

Default reference data files for use with QIIME.

quota-alignment

Guided synteny alignment between duplicated genomes (within specified quota constraint)