Dr Stevie Pederson
Black Ochre Data Labs
Indigenous Genomics
Telethon Kids Institute
July 9-11, 2024
This will be a three day course to enable researchers to develop their
capabilities using the language R
. Beginners are welcome and
intermediate users will also gain a great deal from attending.
Day 1 | Topic | Notes | Estimated Duration (approx) |
---|---|---|---|
9:00 | Welcome To Country | 15min | |
Installation Help | 15min | ||
Introducing R & RStudio | Introduction | 40min | |
Spreadsheet-Like Data | Data Import | 60min | |
10:30 | Morning Tea | ||
11:00 | Spreadsheet-Like Data (continued) | ||
Exploring & Manipulating Data | Data Exploration | 60min | |
12:30 | Lunch | ||
1:30 | Visualising Your Data with ggplot2 |
Introductory Visualisation | 60min |
Using stringr to Modify Text |
Working With Text | 30min | |
3:00 | Afternoon Tea | ||
3:30 | Reshaping Data With tidyr |
Reshaping Data | 20min |
Challenges and Bring Your Own Data |
Day 2 | Topic | Notes | Estimated Duration (approx) |
---|---|---|---|
9:00 | Vectors and Data Structures in R |
Data Types | 80min |
10:30 | Morning Tea | ||
11:00 | Basic Statistical Analysis | Basic Statistics | 70min |
12:30 | Lunch | ||
1:30 | Functions | Functions | 70min |
Using Rmarkdown | RMarkdown | 60min | |
3:00 | Afternoon Tea | ||
3:30 | Using Rmarkdown (continued) | ||
Challenges and Bring Your Own Data |
Day 3 | Topic | Notes | Estimated Duration (approx) |
---|---|---|---|
9:00 | The Bioconductor Project | The Bioconductor Project | 40min |
Working with Sequences and Genomic Ranges | References and Ranges | 40min | |
10:30 | Morning Tea | ||
11:00 | Introduction to RNA-Seq | RNA-Seq | 30min |
Bulk RNA-Seq Analysis | Differential Gene Expression | 120min | |
12:30 | Lunch | ||
1:30 | Bulk RNA-Seq Analysis (continued) | ||
Enrichment Analysis | Finding the Underlying Biology | 70min | |
3:00 | Afternoon Tea | ||
3:30 | Challenges & Bring Your Own Data |