radelaide24's Introduction

RAdelaide 2024

Dr Stevie Pederson
Black Ochre Data Labs
Indigenous Genomics
Telethon Kids Institute

July 9-11, 2024

Course Details

This will be a three day course to enable researchers to develop their capabilities using the language R. Beginners are welcome and intermediate users will also gain a great deal from attending.

Provisional Course Outline

Day 1	Topic	Notes	Estimated Duration (approx)
9:00	Welcome To Country		15min
	Installation Help		15min
	Introducing R & RStudio	Introduction	40min
	Spreadsheet-Like Data	Data Import	60min
10:30	Morning Tea
11:00	Spreadsheet-Like Data (continued)
	Exploring & Manipulating Data	Data Exploration	60min
12:30	Lunch
1:30	Visualising Your Data with `ggplot2`	Introductory Visualisation	60min
	Using `stringr` to Modify Text	Working With Text	30min
3:00	Afternoon Tea
3:30	Reshaping Data With `tidyr`	Reshaping Data	20min
	Challenges and Bring Your Own Data

Day 2	Topic	Notes	Estimated Duration (approx)
9:00	Vectors and Data Structures in `R`	Data Types	80min
10:30	Morning Tea
11:00	Basic Statistical Analysis	Basic Statistics	70min
12:30	Lunch
1:30	Functions	Functions	70min
	Using Rmarkdown	RMarkdown	60min
3:00	Afternoon Tea
3:30	Using Rmarkdown (continued)
	Challenges and Bring Your Own Data

Day 3	Topic	Notes	Estimated Duration (approx)
9:00	The Bioconductor Project	The Bioconductor Project	40min
	Working with Sequences and Genomic Ranges	References and Ranges	40min
10:30	Morning Tea
11:00	Introduction to RNA-Seq	RNA-Seq	30min
	Bulk RNA-Seq Analysis	Differential Gene Expression	120min
12:30	Lunch
1:30	Bulk RNA-Seq Analysis (continued)
	Enrichment Analysis	Finding the Underlying Biology	70min
3:00	Afternoon Tea
3:30	Challenges & Bring Your Own Data

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