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abc-units

A Bioinformatics Course: R modules for learning units

bcb330_2017

BCB330 repository, Summer 2017

bcb410-datascience

Learning units collaboratively developed in BCB410 "Applied Bioinformatics" at the University of Toronto, Fall 2017. This terms focus is on "data science".

bcb420-2019-resources

Course resources for BCB420 @ UofT, Winter 2019. Not useful for others.

bcb420.2019.esa

BCB420 @ UofT: Exploratory Systems Analysis tools projects

bcb420.2019.hu.map

bcb420.2019.string

In progress ...

bcb420_geo_gene

bcbbh-2018

Starter code and data

bch2024

Biological Data Analysis with R Workshop

bch441_2016

Course material for BCH441H1 (Bioinformatics) at the University of Toronto. Fall 2016.

bch441_syllabusnetwork

csb195

Teaching code and class projects – CSB195 Computational Biology Foundations, University of Toronto

csb195-2022

dream_toronto_2016

University of Toronto 2016 RNA SMC challenge

gocats

Summarize a GO graph in terms of categories. Sample project for the BCH441H1 (Bioinformatics) course at the University of Toronto. Unlikely to be useful if you are not one of my students.

msatools

ontoscope

BCB420 class project to identify "identity defining" transcription factors for cell types.

qqid

QQIDs - human-compatible random unique identifiers

qrandom

R package: qrandom

r-eda

Exploratory Data Analysis - CBW workshop

r-intro

Introduction to R - first steps: expressions, functions and data

r_eda-clustering

Introduction to clustering of biological data with R.

r_eda-dimensionreduction

Introduction to dimension reduction approaches (principal component analysis) in biological data with R.

r_eda-hypothesistesting

Introduction to hypothesis testing for biological data analysis with R.

r_eda-introduction

Introduction to concepts of Exploratory Data Analysis (EDA) of biological data with R

rete

Network Analysis for Cell- and Systems Biology

rpt

R package template

rptplus

...

rptteam

In progress