WES 'rebuild' route, or other per-section pipeline running about sns

[igordot]

It is arguable what is considered intermediary and final. It is up to the user to keep or delete any files.

If you re-run SNS, it will process any missing segments. One caveat is that segments that generate large files also generate samples.[segment].csv files. That prevents those files from being generated again. This can be useful if you already deleted some files you don't need, but want to add more samples to the same project without having to regenerate all those files again. You can force them to be regenerated if you delete or edit the corresponding samples.[segment].csv file.