Comments (5)
You need a BED file for the probes. You can add it to the project directory like the targets BED.
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The .bed file was present:
example_sns_analysis5$ ll NGS580_targets.bed
-rw-r----- 1 kellys04 molecpathlab 565K Oct 24 17:22 NGS580_targets.bed
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You need a BED file for targets (present) and probes. Two separate files.
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How are you supposed to set up the different .bed files so the program knows which is which?
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The one for probes should say "probes" in the file name. In my personal experience, that has always been the case with the files provided by the manufacturer.
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