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9.0 2.0 1.0 2.41 MB

The IKMB GWAS Association Testing Pipeline

License: MIT License

Nextflow 5.73% R 20.98% Python 68.44% Awk 0.03% Perl 3.29% Shell 1.54%
saige pipeline plink nextflow

gwas-assoc's People

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dellinghaus avatar eikematthias avatar fdegenhardt-ikmb avatar jkaessens avatar lwienbrandt avatar

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jkaessens

gwas-assoc's Issues

Missing singularity container

Hi,

The singularity container in the nextflow.config seems to be missing:

singularity pull  --name jkaessens-ikmb-gwas-qc-assoc-assets.sif library://jkaessens/ikmb-gwas/qc-assoc-assets.sif
FATAL:   While pulling library image: image jkaessens/ikmb-gwas/qc-assoc-assets.sif:latest (amd64) does not exist in the library

The problem also happens during the nextflow run. Looks like it might be the same issue that is present in the gwas-qc issue tracker.

Thank you.

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