ikolesov / carreraslice Goto Github PK

fast growcut + interactive level set

Shell 1.00% C++ 79.48% Python 12.55% C 2.04% MATLAB 1.86% CMake 3.07%

carreraslice's Introduction

Grow cut, level set integration for interactive segmentation. Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev. 

December 2013

carreraslice's People

Contributors

Watchers

Forkers

jcfr lassoan pkarasev3

carreraslice's Issues

Fix build error on windows

D:\D\N\S-1-E-b\CarreraSlice\src\sfm_local_chanvese\src\lsops3c.cpp(294): error C2039: 'max' : is not a member of 'std' [D:\D\N\S-1-E-b\CarreraSlice-build\src\sfm_local_chanvese\sfm_local_chanvese.vcxproj]

Associate 3d-slicer-extension topic with the repository

Could you associate the 3d-slicer-extension GitHub topic so that it is listed here: https://github.com/topics/3d-slicer-extension

To learn more about topic, read https://help.github.com/en/articles/about-topics

NameError: global name 'mainWindow' is not defined

Traceback (most recent call last):
  File "/home/jcfr/.config/NA-MIC/Extensions-24305/CarreraSlice/lib/Slicer-4.4/qt-scripted-modules/CarreraSliceEffect.py", line 175, in onStartBot
    KSliceBot(self)
  File "/home/jcfr/.config/NA-MIC/Extensions-24305/CarreraSlice/lib/Slicer-4.4/qt-scripted-modules/CarreraSliceEffect.py", line 221, in __init__
    self.start()
  File "/home/jcfr/.config/NA-MIC/Extensions-24305/CarreraSlice/lib/Slicer-4.4/qt-scripted-modules/CarreraSliceEffect.py", line 225, in start
    self.logic = KSliceEffectLogic( self.redSliceWidget.sliceLogic() )
  File "/home/jcfr/.config/NA-MIC/Extensions-24305/CarreraSlice/lib/Slicer-4.4/qt-scripted-modules/CarreraSliceEffect.py", line 366, in __init__
    self.init_fGrwoCut()
  File "/home/jcfr/.config/NA-MIC/Extensions-24305/CarreraSlice/lib/Slicer-4.4/qt-scripted-modules/CarreraSliceEffect.py", line 426, in init_fGrwoCut
    s = qt.QShortcut(keydef[0], mainWindow()) # connect this qt event to mainWindow focus
NameError: global name 'mainWindow' is not defined

Clang does not support openmp

@ikolesov

The clang compilers (Mac 10.9) do not support openmp.

This little patch allows building.

diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 9a85074..f9f017a 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -14,10 +14,10 @@ set(KSLICE_VERSION_MAJOR "1")
set(KSLICE_VERSION_MINOR "0")
set(KSLICE_VERSION ${KSLICE_VERSION_MAJOR}.${KSLICE_VERSION_MINOR})
set(EXTENSION_STATUS "Beta")
-set(EXTENSION_DEPENDS "NA")
+set(EXTENSION_DEPENDS "NA")
set(EXTENSION_SCREENSHOTURLS "http://www.slicer.org/slicerWiki/images/thumb/2/2c/DrawLabel.png/500px-DrawLabel.png http://www.na-mic.org/Wiki/images/thumb/d/d0/TendonSegment.png/800px-TendonSegment.png http://www.na-mic.org/Wiki/images

"boost") # Specified as a space separated list or 'NA' if any

-#set(EXTENSION_BUILD_SUBDIRECTORY
+#set(EXTENSION_BUILD_SUBDIRECTORY

set(MIDAS_PACKAGE_URL http://slicer.kitware.com/midas3)
set(MIDAS_PACKAGE_EMAIL [email protected])
@@ -66,8 +66,8 @@ else(WIN32)
set(CMAKE_C_FLAGS "-fPIC -g3 -Wall -pipe -DVTK_EXCLUDE_STRSTREAM_HEADERS -Wl,--no-undefined -fopenmp" CACHE STRING "compiler flags always used" FORCE)
set(CMAKE_CXX_FLAGS "-fPIC -Wall -pipe -DVTK_EXCLUDE_STRSTREAM_HEADERS -Wl,--no-undefined -fopenmp" CACHE STRING "compiler flags always used" FORCE)
else(LINUX)

set(CMAKE_C_FLAGS "-fPIC -g3 -Wall -pipe -DVTK_EXCLUDE_STRSTREAM_HEADERS -fopenmp" CACHE STRING "compiler flags always used" FORCE)
set(CMAKE_CXX_FLAGS "-fPIC -Wall -pipe -DVTK_EXCLUDE_STRSTREAM_HEADERS -fopenmp" CACHE STRING "compiler flags always used" FORCE)
set(CMAKE_C_FLAGS "-fPIC -g3 -Wall -pipe -DVTK_EXCLUDE_STRSTREAM_HEADERS " CACHE STRING "compiler flags always used" FORCE)
set(CMAKE_CXX_FLAGS "-fPIC -Wall -pipe -DVTK_EXCLUDE_STRSTREAM_HEADERS " CACHE STRING "compiler flags always used" FORCE)
endif(LINUX)
set(CMAKE_CXX_FLAGS_DEBUG "-g3 " CACHE STRING "extra compiler flags for debug" FORCE )
endif(WIN32)
diff --git a/src/fastGrowCut/CMakeLists.txt b/src/fastGrowCut/CMakeLists.txt
index b3e0b67..32740c0 100644
--- a/src/fastGrowCut/CMakeLists.txt
+++ b/src/fastGrowCut/CMakeLists.txt
@@ -16,8 +16,8 @@ else(WIN32)
set(CMAKE_C_FLAGS "-fPIC -g3 -Wall -pipe -DVTK_EXCLUDE_STRSTREAM_HEADERS -Wl,--no-undefined -fopenmp" CACHE STRING "compiler flags always used" FORCE)
set(CMAKE_CXX_FLAGS "-fPIC -Wall -pipe -DVTK_EXCLUDE_STRSTREAM_HEADERS -Wl,--no-undefined -fopenmp" CACHE STRING "compiler flags always used" FORCE)
else(LINUX)
set(CMAKE_C_FLAGS "-fPIC -g3 -Wall -pipe -DVTK_EXCLUDE_STRSTREAM_HEADERS -fopenmp" CACHE STRING "compiler flags always used" FORCE)
set(CMAKE_CXX_FLAGS "-fPIC -Wall -pipe -DVTK_EXCLUDE_STRSTREAM_HEADERS -fopenmp" CACHE STRING "compiler flags always used" FORCE)
set(CMAKE_C_FLAGS "-fPIC -g3 -Wall -pipe -DVTK_EXCLUDE_STRSTREAM_HEADERS " CACHE STRING "compiler flags always used" FORCE)
set(CMAKE_CXX_FLAGS "-fPIC -Wall -pipe -DVTK_EXCLUDE_STRSTREAM_HEADERS " CACHE STRING "compiler flags always used" FORCE)
endif(LINUX)
set(CMAKE_CXX_FLAGS_DEBUG "-g3 " CACHE STRING "extra compiler flags for debug" FORCE )
endif(WIN32)

Remove dependency on deprecated Slicer core modules

We are planning to remove Slicer core modules that have been superseded by other modules.
https://discourse.slicer.org/t/removing-legacy-modules-in-slicer5/11371

We have noticed that this extension currently uses legacy editor module, instead of the current Segment Editor module.

If you want your extension to be available for the upcoming Slicer5 release, please remove dependency to deprecated modules. If you have any questions or need any help with the upgrade, you can write here or post to the Slicer forum. Thank you for your contribution.

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