trackingGraph.weightsListToDict([transitionWeight, detectionWeight, divisionWeight, appearanceWeight, disappearanceWeight])
withDivisions True
INFO ilastik.applets.tracking.conservation.opConservationTracking: generating traxels
INFO ilastik.applets.tracking.conservation.opConservationTracking: fetching region features and division probabilities
INFO ilastik.applets.objectClassification.opObjectClassification: training on matrix of shape (1, 33)
INFO lazyflow.classifiers.parallelVigraRfLazyflowClassifier: Training took, 0.000745 seconds
INFO lazyflow.classifiers.parallelVigraRfLazyflowClassifier: Training complete. Average OOB: nan
INFO ilastik.applets.objectClassification.opObjectClassification: training finished, average out-of-bag error: nan
INFO ilastik.applets.objectClassification.opObjectClassification: training on matrix of shape (3, 31)
INFO lazyflow.classifiers.parallelVigraRfLazyflowClassifier: Training took, 0.00109 seconds
INFO lazyflow.classifiers.parallelVigraRfLazyflowClassifier: Training complete. Average OOB: 1.0
INFO ilastik.applets.objectClassification.opObjectClassification: training finished, average out-of-bag error: 1.0
INFO ilastik.applets.tracking.conservation.opConservationTracking: filling traxelstore
[====================] 100%
[====================] 100%
INFO ilastik.applets.tracking.structured.opStructuredTracking: Structured Learning: Adding Training Annotations to Hypotheses Graph
INFO ilastik.applets.tracking.structured.opStructuredTracking: max nearest neighbors=
[====================] 100%
inintialWeights {'weights': [0.01, 0.6, 0.3, 0.2]}
************************
Settings are:
StatesShareWeights: true
AllowPartialMergerAppearance: false
AllowLengthOneTracks: false
RequireSeparateChildrenOfDivision: true
NonNegativeWeightsOnly: false
OptimizerEpGap: 0.005
OptimizerVerbose: true
OptimizerNumThreads: 1
************************
contains 0 segmentation hypotheses
contains 0 linking hypotheses
Provided length of vector with initial weights has wrong length!
ERROR 2016-12-09 13:52:41,627 log_exception 6322 140393793619776 Traceback (most recent call last):
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/shell/projectManager.py", line 443, in _loadProject
self.workflow.onProjectLoaded( self )
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/workflows/tracking/structured/structuredTrackingWorkflow.py", line 438, in onProjectLoaded
self.batchProcessingApplet.run_export_from_parsed_args(self._batch_input_args)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/applets/batchProcessing/batchProcessingApplet.py", line 60, in run_export_from_parsed_args
return self.run_export(role_path_dict, parsed_args.input_axes)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/applets/batchProcessing/batchProcessingApplet.py", line 121, in run_export
export_to_array=export_to_array )
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/applets/batchProcessing/batchProcessingApplet.py", line 223, in _run_export_with_empty_batch_lane
self.dataExportApplet.prepare_lane_for_export(batch_lane_index)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/workflows/tracking/structured/structuredTrackingWorkflow.py", line 342, in prepare_lane_for_export
withBatchProcessing=True)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/applets/tracking/structured/opStructuredTracking.py", line 333, in _runStructuredLearning
mht.trainWithWeightInitialization(model,gt, initialWeights)
RuntimeError: Provided length of vector with initial weights has wrong length!
ERROR 2016-12-09 13:52:41,628 log_exception 6322 140393793619776 Project could not be loaded due to the exception shown above.
Aborting Project Open Action
E
======================================================================
ERROR: testStructuredLearningTrackingHytraWithMergers.TestStructuredLearningTrackingHeadless.testStructuredLearningTrackingHeadless
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/jales/software/miniconda/envs/ilastik-devel/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/lazyflow/lazyflow/utility/timer.py", line 142, in wrapper
return func(*args, **kwargs)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/tests/test_applets/structuredLearningTracking/testStructuredLearningTrackingHytraWithMergers.py", line 114, in testStructuredLearningTrackingHeadless
self.ilastik_startup.main()
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/../ilastik.py", line 108, in main
ilastik_main.main(parsed_args, workflow_cmdline_args)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik_main.py", line 102, in main
f(shell)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik_main.py", line 317, in loadProject
shell.openProjectFile(path, parsed_args.readonly)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/shell/headless/headlessShell.py", line 116, in openProjectFile
self.projectManager._loadProject(hdf5File, projectFilePath, readOnly)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/lazyflow/lazyflow/utility/timer.py", line 142, in wrapper
return func(*args, **kwargs)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/shell/projectManager.py", line 443, in _loadProject
self.workflow.onProjectLoaded( self )
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/workflows/tracking/structured/structuredTrackingWorkflow.py", line 438, in onProjectLoaded
self.batchProcessingApplet.run_export_from_parsed_args(self._batch_input_args)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/applets/batchProcessing/batchProcessingApplet.py", line 60, in run_export_from_parsed_args
return self.run_export(role_path_dict, parsed_args.input_axes)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/applets/batchProcessing/batchProcessingApplet.py", line 121, in run_export
export_to_array=export_to_array )
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/applets/batchProcessing/batchProcessingApplet.py", line 223, in _run_export_with_empty_batch_lane
self.dataExportApplet.prepare_lane_for_export(batch_lane_index)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/workflows/tracking/structured/structuredTrackingWorkflow.py", line 342, in prepare_lane_for_export
withBatchProcessing=True)
File "/home/jales/software/miniconda/envs/ilastik-devel/ilastik-meta/ilastik/ilastik/applets/tracking/structured/opStructuredTracking.py", line 333, in _runStructuredLearning
mht.trainWithWeightInitialization(model,gt, initialWeights)
RuntimeError: Provided length of vector with initial weights has wrong length!