Easy to extract data from gff3 generated by interproscan.
USAGE:
interproscan-reader [OPTIONS] --input <input>
FLAGS:
-h, --help Prints help information
-V, --version Prints version information
OPTIONS:
--comment <comment> [default: #]
--domain-expr <domain-expr> To select records by domain ID
--id-expr <id-expr> To select records by transcripts (or gene) ID
-i, --input <input> Input GFF3 file generated by interproscan
--log-level <log-level> [possible values: DEBUG, INFO, WARN, ERROR]
--max-length <max-length>
--min-length <min-length>
--outformat <out-format> [possible values: ID, ALL, TSV]
--source-expr <source-expr> Filter output by source name
You can use very simple expression to select domain records.
op | description |
---|---|
! |
NOT |
| or , |
OR |
& |
AND |
() |
Priority |
(cd10017,PF02362) & !PF06507
means you select records includingcd10017
orPF02362
and NOT includingPF06507
.