intermine / flymine-bio-sources

Data sources for FlyMine

FlyMine

Master:

This is a repository of all the data parsers used to load Drosophila data into an InterMine instance (FlyMine). These are fly-specific data, and in addition to the core data parsers available in InterMine. See the intermine-scripts respository for the scripts we use to actually download the fly data.

• FlyMine
• FlyMine User Docs
• InterMine
• InterMine Docs

Copyright and Licence

Copyright (C) 2002-2018 FlyMine

See LICENSE file for licensing information.

This product includes software developed by the Apache Software Foundation

Please cite

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.
Smith RN, Aleksic J, Butano D, Carr A, Contrino S, Hu F, Lyne M, Lyne R, Kalderimis A, Rutherford K, Stepan R, Sullivan J, Wakeling M, Watkins X, Micklem G.
Bioinformatics (2012) 28 (23): 3163-3165.

flymine-bio-sources's Issues

Update obo converters to add ontology licence

FIx LongOligo bio source

The LongOligoGFF3SeqHandler.java class should implement the method makeSequenceItem(this, identifier, record) instead of sequenceHandler.makeSequenceItem(this, identifier) whic is never invoked By th GFF3Converter.
This is due to a relative recent change