Name: Human Immune Monitoring Center at Mount Sinai
Type: Organization
Bio: Human Immune Monitoring Center at the Icahn School of Medicine at Mount Sinai.
Location: Hess Center for Science and Medicine 1470 Madison Avenue New York, NY 10029
Blog: https://icahn.mssm.edu/research/human-immune-monitoring-center
Human Immune Monitoring Center at Mount Sinai's Projects
Example dockerized flask app (modified from template) for deployment on Amazon Web Services Elastic Beanstalk.
WebGL Clustergrammer JavaScript Library
"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
A custom Jupyter widget library built using the widget-ts-cookiecutter.
Examples using Clustergrammer2 to explore high-dimensional datasets.
Collection of cell type and cell state signatures built to easily integrate with Clustergrammer2 single cell toolkit.
Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
Cytometry quality control and reproducibility utilities
Data and analysis scripts for our Embryo Timecourse paper.
Upload your files into the binder environment.
Configuration for deploying Voila Gallery
Using voila with bqplot to visualize gaussian density
A UI for allowing researchers to view single cell sequencing data (filtered gene bc matrices, raw gene bc matrices, and web summary) associated with their samples. Raw bcl2 files, fastqs, and cellranger count output will be saved in an AWS S3 bucket.