This is the forked version of the repo adapted to be used with Hector's data.
For original instructions, see Original README
This repo uses poetry to install and manage its dependencies. Follow the official instructions here to install onto your dev system.
Once poetry is installed, run
poetry install
which should download and install all the necessary dependencies for this project, including the specified version of the python3 runtime itself.
NOTE: This adapted version of the repo uses slightly different versions for the dependency (updated in myproject.toml), since the original ones was throwing errors during installing.
The scripts in the scripts/ directly save intermediate results to disk when run. The path for saving and reading is hardcoded in replay_structure/metadata.py.
Edit the WORKING_PATH variable in this file to use your own project dir.
For now, manually create the necessary directories for the script to read data from and save data to.
mkdir replay_structure/data
mkdir replay_structure/data/ratday
mkdir replay_structure/data/ripples
mkdir replay_structure/data/structure_analysis_input
mkdir replay_structure/results
mkdir replay_structure/results/ripples
mv path/to/OpenFieldData.mat replay_structure/data/
The source code dir needs to be added to the PYTHONPATH env var, so that python runtime knows where to import them whent the scripts are run.
PYTHONPATH=$PYTHONPATH:$(pwd)
Save this to your ~/.bashrc file if you want this to persist across bash sessions.
The scripts must be run in a specific sequence as they might use intermediate results saved by the previous scripts.
The full data set contains 8 sessions (4 rats x 2 days each), and multiple types of analysis (ripples, HSEs, etc). However, in the following examples, we will only analyze the first session (Session 0), for the ripples data type.
poetry run python3 scripts/local/preprocess_spikemat_data.py --data_type ripples --session 0
sample output:
running session rat1day1 with 4cm binsand 3ms time window.
loading /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/data/ratday/rat1day1_4cm.obj
Getting ripple spikemats
[203 174 133 ... 4 2 133]
[203 174 133 ... 4 2 133]
2.1254355603745685 1.542078101922343
saving /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/data/ripples/rat1day1_4cm_3ms.obj
poetry run python3 scripts/local/reformat_data_for_structure_analysis.py --data_type ripples --session 0
sample output:
poisson
running session rat1day1 with 4cm binsand 3ms time window.
loading /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/data/ripples/rat1day1_4cm_3ms.obj
saving /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/data/structure_analysis_input/rat1day1_ripples_4cm_3ms_poisson.obj
poetry run python3 scripts/local/run_model.py --model_name stationary --data_type ripples --session 0
sample output:
running stationary model on ripples data, with 4cm bins and 3ms time window
loading /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/data/structure_analysis_input/rat1day1_ripples_4cm_3ms_poisson.obj
saving /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/results/ripples/rat1day1_4cm_3ms_poisson_stationary.obj
poetry run python3 scripts/local/run_model.py --model_name random --data_type ripples --session 0
sample output:
running random model on ripples data, with 4cm bins and 3ms time window
loading /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/data/structure_analysis_input/rat1day1_ripples_4cm_3ms_poisson.obj
saving /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/results/ripples/rat1day1_4cm_3ms_poisson_random.obj
For the remaining 3 models, the original authors use o2 clusters to parallelize the computation for each session, data_type, time_window, etc, but we will simply run a single set of these parameters locally
poetry run python3 scripts/o2/diffusion_gridsearch.py 0 real ripples 3 poisson
sample output:
running diffusion gridsearch for {session_indicator}
loading /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/data/structure_analysis_input/rat1day1_ripples_4cm_3ms_poisson.obj
sd = 0.1
[ -482.25370323 -220.67401409 -1418.5215786 -292.98373244
-324.82861333]
sd = 0.12
[ -482.25369783 -220.67401358 -1418.52157673 -292.98372991
-324.82860759]
sd = 0.13
[ -482.25361968 -220.67400623 -1418.52154963 -292.9836932
-324.8285244 ]
sd = 0.15
[ -482.24945443 -220.67361513 -1418.52011114 -292.9817435
-324.82410439]
sd = 0.18
[ -482.08466145 -220.65920847 -1418.47058249 -292.91373059
-324.66759698]
sd = 0.2
[ -481.29798065 -220.60527445 -1418.33518767 -292.71153431
-324.16443012]
sd = 0.24
[ -476.22770894 -220.24645662 -1418.4396721 -292.28051915
-322.03265487]
sd = 0.27
[ -472.23833196 -219.84951221 -1418.77039407 -292.62609978
-320.20506093]
sd = 0.31
[ -468.47475089 -219.53640788 -1413.78735533 -293.82800967
-318.10398757]
sd = 0.36
[ -465.88288213 -219.61104866 -1411.22329554 -295.18789678
-316.48604093]
sd = 0.42
[ -463.94860212 -219.98026793 -1410.67381977 -295.8945137
-315.64071852]
sd = 0.48
[ -462.19488769 -220.39171233 -1410.86477896 -296.24922902
-315.32697474]
sd = 0.56
[ -460.22312683 -220.93103798 -1411.49395495 -296.67911534
-315.24244078]
sd = 0.64
[ -458.78951583 -221.45400247 -1412.09325835 -297.18424432
-315.35291153]
sd = 0.74
0[ -457.56412188 -222.07654996 -1412.34489785 -297.92716493
-315.64310526]
sd = 0.85
^R
[ -456.63200188 -222.71862266 -1412.84579111 -298.82890506
-316.06686676]
sd = 0.98
[ -455.77829109 -223.41558312 -1412.67279912 -299.92886809
-316.63567664]
sd = 1.1
[ -454.90975356 -224.16736578 -1411.061653 -301.26531395
-317.37980824]
sd = 1.3
[ -454.21547219 -224.83463423 -1410.13428557 -302.6454093
-318.1903282 ]
sd = 1.5
[ -453.69773766 -225.45733767 -1409.994557 -304.22931364
-319.14844002]
sd = 1.7
[ -453.37390651 -225.92990869 -1410.45197263 -306.01048909
-320.24216945]
sd = 2.0
[ -453.17976312 -226.11625829 -1411.01578054 -308.03662718
-321.50605898]
sd = 2.3
[ -453.10932281 -226.08873664 -1411.30813498 -310.23650874
-322.92463568]
sd = 2.7
[ -453.24797878 -226.11749751 -1411.05565515 -312.56649528
-324.52220261]
sd = 3.1
[ -453.67799128 -226.34362151 -1410.41200171 -314.92714442
-326.26949618]
sd = 3.6
[ -454.43191531 -226.78179863 -1410.0906611 -317.37039577
-328.17193582]
sd = 4.1
[ -455.53897053 -227.41680226 -1410.46324823 -320.01962562 -330.25957034]
sd = 4.7
[ -456.97996639 -228.19571168 -1411.51507082 -322.82183566
-332.47433405]
sd = 5.5
[ -458.74255214 -229.07379565 -1412.873185 -325.74538211
-334.82751865]
sd = 6.3
[ -460.6561037 -229.98367079 -1413.99394842 -328.70001539
-337.29037511]
saving /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/results/ripples/rat1day1_4cm_3ms_poisson_diffusion_gridsearch.obj
done
poetry run python3 scripts/o2/momentum_gridsearch_ratdayripple.py 0 real ripples 3 poisson 1
sample output:
running diffusion gridsearch for {session_indicator}
loading /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/data/structure_analysis_input/rat1day1_ripples_4cm_3ms_poisson.obj
sd = 4e+01
decay = 1
LIKELIHOOD: -482.25306903300664463
decay = 25
LIKELIHOOD: -482.25355621245989182
decay = 50
LIKELIHOOD: -482.25366869000092354
decay = 75
LIKELIHOOD: -482.25369266367696436
decay = 100
LIKELIHOOD: -482.2536966610872476
decay = 200
LIKELIHOOD: -482.2536882155629112
decay = 300
LIKELIHOOD: -482.25370322764297523
decay = 400
LIKELIHOOD: -482.25370322764297693
decay = 500
LIKELIHOOD: -482.25370322764297693
decay = 800
LIKELIHOOD: -482.25370322764297693
sd = 4.3e+01
decay = 1
LIKELIHOOD: -482.22530217704542305
decay = 25
LIKELIHOOD: -482.24844563727835853
decay = 50
LIKELIHOOD: -482.25198911841024696
decay = 75
LIKELIHOOD: -482.25253120934463646
decay = 100
LIKELIHOOD: -482.2524637295980047
decay = 200
LIKELIHOOD: -482.25177015325144383
decay = 300
LIKELIHOOD: -482.2537032276422411
decay = 400
LIKELIHOOD: -482.2537032276429769
decay = 500
LIKELIHOOD: -482.25370322764297693
decay = 800
LIKELIHOOD: -482.25370322764297693
sd = 4.7e+01
decay = 1
LIKELIHOOD: -481.06081055195265858
decay = 25
LIKELIHOOD: -481.91736313744507286
decay = 50
LIKELIHOOD: -482.13003124119425868
decay = 75
LIKELIHOOD: -482.1515949476581413
decay = 100
LIKELIHOOD: -482.1392171654192842
decay = 200
LIKELIHOOD: -482.15168258868309425
decay = 300
LIKELIHOOD: -482.25370322751750873
decay = 400
LIKELIHOOD: -482.25370322764282238
decay = 500
LIKELIHOOD: -482.25370322764297737
decay = 800
LIKELIHOOD: -482.25370322764297693
sd = 5.1e+01
decay = 1
LIKELIHOOD: -477.43124095109322763
decay = 25
LIKELIHOOD: -478.9595272250600942
decay = 50
LIKELIHOOD: -480.0377662549215707
decay = 75
LIKELIHOOD: -480.33276464350299664
decay = 100
LIKELIHOOD: -480.27699829020739888
decay = 200
LIKELIHOOD: -480.8846667695434545
decay = 300
LIKELIHOOD: -482.25370321587639302
decay = 400
LIKELIHOOD: -482.25370322761365094
decay = 500
LIKELIHOOD: -482.25370322764292194
decay = 800
LIKELIHOOD: -482.25370322764297693
sd = 5.5e+01
decay = 1
LIKELIHOOD: -473.9976858674551738
decay = 25
LIKELIHOOD: -475.3656407705826996
decay = 50
LIKELIHOOD: -476.49129118304041228
decay = 75
LIKELIHOOD: -477.00185808149270048
decay = 100
LIKELIHOOD: -477.05272980834394095
decay = 200
LIKELIHOOD: -478.4528587305000658
decay = 300
LIKELIHOOD: -482.25370250191138527
decay = 400
LIKELIHOOD: -482.25370322501445988
decay = 500
LIKELIHOOD: -482.2537032276274381
decay = 800
LIKELIHOOD: -482.25370322764297693
sd = 5.9e+01
decay = 1
LIKELIHOOD: -470.96066502751937574
decay = 25
LIKELIHOOD: -472.2074374931420933
decay = 50
LIKELIHOOD: -473.25081366340877168
decay = 75
LIKELIHOOD: -473.8944574816612474
decay = 100
LIKELIHOOD: -474.12283823938541766
decay = 200
LIKELIHOOD: -476.25406373807337285
decay = 300
LIKELIHOOD: -482.25366856876367894
decay = 400
LIKELIHOOD: -482.25370310491063236
decay = 500
LIKELIHOOD: -482.25370322610679813
decay = 800
LIKELIHOOD: -482.25370322764297643
sd = 6.4e+01
decay = 1
LIKELIHOOD: -468.105036545600873
decay = 25
LIKELIHOOD: -469.36410204861194845
decay = 50
LIKELIHOOD: -470.31095076500913862
decay = 75
LIKELIHOOD: -470.99939539539933236
decay = 100
LIKELIHOOD: -471.42597828239648014
decay = 200
LIKELIHOOD: -474.4024320179812503
decay = 300
LIKELIHOOD: -482.25240914639997786
decay = 400
LIKELIHOOD: -482.25369992258238624
decay = 500
LIKELIHOOD: -482.25370314998021834
decay = 800
LIKELIHOOD: -482.25370322764255182
sd = 6.9e+01
decay = 1
LIKELIHOOD: -465.159698305692559
decay = 25
LIKELIHOOD: -466.59385351874839962
decay = 50
LIKELIHOOD: -467.53978670293204575
decay = 75
LIKELIHOOD: -468.22030156876322848
decay = 100
LIKELIHOOD: -468.77420526121012573
decay = 200
LIKELIHOOD: -472.73223168034775235
decay = 300
LIKELIHOOD: -482.21919613428261933
decay = 400
LIKELIHOOD: -482.2536472655025778
decay = 500
LIKELIHOOD: -482.25370104007391425
decay = 800
LIKELIHOOD: -482.25370322757313107
sd = 7.5e+01
decay = 1
LIKELIHOOD: -462.02519823460350254
decay = 25
LIKELIHOOD: -463.66970549195451615
decay = 50
LIKELIHOOD: -464.8169537864340448
decay = 75
LIKELIHOOD: -465.54977687545122927
decay = 100
LIKELIHOOD: -466.16875421846798383
decay = 200
LIKELIHOOD: -470.9774743730562832
decay = 300
LIKELIHOOD: -481.73359687318511696
decay = 400
LIKELIHOOD: -482.25303186277795003
decay = 500
LIKELIHOOD: -482.25366514343211952
decay = 800
LIKELIHOOD: -482.25370322209433405
sd = 8.1e+01
decay = 1
LIKELIHOOD: -459.05093602427388905
decay = 25
LIKELIHOOD: -460.77497702216444897
decay = 50
LIKELIHOOD: -462.18970679912382246
decay = 75
LIKELIHOOD: -463.0785625008183414
decay = 100
LIKELIHOOD: -463.7628850196344127
decay = 200
LIKELIHOOD: -469.0908288869096153
decay = 300
LIKELIHOOD: -479.87559338864648836
decay = 400
LIKELIHOOD: -482.24728057285031943
decay = 500
LIKELIHOOD: -482.25326464988865904
decay = 800
LIKELIHOOD: -482.2537029964434489
sd = 8.8e+01
decay = 1
LIKELIHOOD: -456.5467659598937521
decay = 25
LIKELIHOOD: -458.23447794175252917
decay = 50
LIKELIHOOD: -459.76948832857917093
decay = 75
LIKELIHOOD: -460.84972964028766151
decay = 100
LIKELIHOOD: -461.61947093862748023
decay = 200
LIKELIHOOD: -467.2129765458810567
decay = 300
LIKELIHOOD: -477.48448874359812602
decay = 400
LIKELIHOOD: -482.19682632752697882
decay = 500
LIKELIHOOD: -482.25009466370900274
decay = 800
LIKELIHOOD: -482.25369766423447856
sd = 9.5e+01
decay = 1
LIKELIHOOD: -454.605637598714967
decay = 25
LIKELIHOOD: -456.15545823072184836
decay = 50
LIKELIHOOD: -457.65682662862149427
decay = 75
LIKELIHOOD: -458.8676411853634984
decay = 100
LIKELIHOOD: -459.73627699334115226
decay = 200
LIKELIHOOD: -465.38839369300375115
decay = 300
LIKELIHOOD: -475.07393025597267028
decay = 400
LIKELIHOOD: -481.7791026461789133
decay = 500
LIKELIHOOD: -482.23053287559478916
decay = 800
LIKELIHOOD: -482.25361915027029977
sd = 1e+02
decay = 1
LIKELIHOOD: -453.32209737654219683
decay = 25
LIKELIHOOD: -454.59260936087562743
decay = 50
LIKELIHOOD: -455.98910994861488097
decay = 75
LIKELIHOOD: -457.22815529756559372
decay = 100
LIKELIHOOD: -458.16450583573057181
decay = 200
LIKELIHOOD: -463.62347722718718315
decay = 300
LIKELIHOOD: -472.7341090261625373
decay = 400
LIKELIHOOD: -480.01792328528189596
decay = 500
LIKELIHOOD: -482.12343394654606346
decay = 800
LIKELIHOOD: -482.25285032201834765
sd = 1.1e+02
decay = 1
LIKELIHOOD: -452.69515954743138997
decay = 25
LIKELIHOOD: -453.5916437329682678
decay = 50
LIKELIHOOD: -454.83970183264424877
decay = 75
LIKELIHOOD: -456.03748862189572458
decay = 100
LIKELIHOOD: -456.99434317931815905
decay = 200
LIKELIHOOD: -461.98057341929331823
decay = 300
LIKELIHOOD: -470.51555904322037835
decay = 400
LIKELIHOOD: -477.24366398693492122
decay = 500
LIKELIHOOD: -481.55181283166973297
decay = 800
LIKELIHOOD: -482.2475255768512863
sd = 1.2e+02
decay = 1
LIKELIHOOD: -452.55888251624641205
decay = 25
LIKELIHOOD: -453.0650340706451523
decay = 50
LIKELIHOOD: -454.12583723724951282
decay = 75
LIKELIHOOD: -455.25438235365934075
decay = 100
LIKELIHOOD: -456.21327576712428498
decay = 200
LIKELIHOOD: -460.55283846188760608
decay = 300
LIKELIHOOD: -468.350137433003648
decay = 400
LIKELIHOOD: -474.37834353767737852
decay = 500
LIKELIHOOD: -479.63240037353019443
decay = 800
LIKELIHOOD: -482.21977070315731817
sd = 1.3e+02
decay = 1
LIKELIHOOD: -452.69953161206171852
decay = 25
LIKELIHOOD: -452.84646131768852598
decay = 50
LIKELIHOOD: -453.68908586082528825
decay = 75
LIKELIHOOD: -454.72883983456743268
decay = 100
LIKELIHOOD: -455.68900510960305952
decay = 200
LIKELIHOOD: -459.39882871089207667
decay = 300
LIKELIHOOD: -466.17631779123161193
decay = 400
LIKELIHOOD: -471.73338431956996786
decay = 500
LIKELIHOOD: -476.75578991443080423
decay = 800
LIKELIHOOD: -482.10114843418043953
sd = 1.4e+02
decay = 1
LIKELIHOOD: -452.95631147579022815
decay = 25
LIKELIHOOD: -452.7952862982784926
decay = 50
LIKELIHOOD: -453.40200481625408307
decay = 75
LIKELIHOOD: -454.32694425334646018
decay = 100
LIKELIHOOD: -455.27477667225580085
decay = 200
LIKELIHOOD: -458.51525362823613757
decay = 300
LIKELIHOOD: -464.1201693332773457
decay = 400
LIKELIHOOD: -469.37653295309137608
decay = 500
LIKELIHOOD: -473.8017671108706411
decay = 800
LIKELIHOOD: -481.64135356085920203
sd = 1.5e+02
decay = 1
LIKELIHOOD: -453.245896712186573
decay = 25
LIKELIHOOD: -452.83089294413680023
decay = 50
LIKELIHOOD: -453.19688018313176034
decay = 75
LIKELIHOOD: -453.98060761123887522
decay = 100
LIKELIHOOD: -454.88338833189503937
decay = 200
LIKELIHOOD: -457.84702820845400978
decay = 300
LIKELIHOOD: -462.34587487790625432
decay = 400
LIKELIHOOD: -467.28409267911084576
decay = 500
LIKELIHOOD: -471.09806147661351441
decay = 800
LIKELIHOOD: -480.20554868432778667
sd = 1.7e+02
decay = 1
LIKELIHOOD: -453.54479011929969295
decay = 25
LIKELIHOOD: -452.92358176250349974
decay = 50
LIKELIHOOD: -453.05209543909624448
decay = 75
LIKELIHOOD: -453.67195893838403148
decay = 100
LIKELIHOOD: -454.49177158148176794
decay = 200
LIKELIHOOD: -457.31936762952820885
decay = 300
LIKELIHOOD: -460.90400732800934136
decay = 400
LIKELIHOOD: -465.38022214103045104
decay = 500
LIKELIHOOD: -468.75969676633284994
decay = 800
LIKELIHOOD: -477.68208953655997537
sd = 1.8e+02
decay = 1
LIKELIHOOD: -453.85583975049759237
decay = 25
LIKELIHOOD: -453.0710201137396582
decay = 50
LIKELIHOOD: -452.97219534993777557
decay = 75
LIKELIHOOD: -453.41024447918206214
decay = 100
LIKELIHOOD: -454.11516643792380318
decay = 200
LIKELIHOOD: -456.86879494602623702
decay = 300
LIKELIHOOD: -459.76649258358112135
decay = 400
LIKELIHOOD: -463.63133770288070493
decay = 500
LIKELIHOOD: -466.8177972081680065
decay = 800
LIKELIHOOD: -474.80287914812879524
sd = 1.9e+02
decay = 1
LIKELIHOOD: -454.1849507483902531
decay = 25
LIKELIHOOD: -453.2775656710779857
decay = 50
LIKELIHOOD: -452.9685156182175322
decay = 75
LIKELIHOOD: -453.2129189675741778
decay = 100
LIKELIHOOD: -453.77897164990437737
decay = 200
LIKELIHOOD: -456.44925814994961302
decay = 300
LIKELIHOOD: -458.8702170549610656
decay = 400
LIKELIHOOD: -462.09663919178402688
decay = 500
LIKELIHOOD: -465.17052097874941016
decay = 800
LIKELIHOOD: -472.02573362889455386
sd = 2.1e+02
decay = 1
LIKELIHOOD: -454.53069202359155776
decay = 25
LIKELIHOOD: -453.54295085813298624
decay = 50
LIKELIHOOD: -453.04844106229576609
decay = 75
LIKELIHOOD: -453.09575777589724987
decay = 100
LIKELIHOOD: -453.50530860393802898
decay = 200
LIKELIHOOD: -456.0319299335490625
decay = 300
LIKELIHOOD: -458.1503512634544833
decay = 400
LIKELIHOOD: -460.81821842397419564
decay = 500
LIKELIHOOD: -463.66506357246703582
decay = 800
LIKELIHOOD: -469.6006399367819916
sd = 2.3e+02
decay = 1
LIKELIHOOD: -454.88428557681918055
decay = 25
LIKELIHOOD: -453.8583979565072917
decay = 50
LIKELIHOOD: -453.21158046610846976
decay = 75
LIKELIHOOD: -453.068519643342944
decay = 100
LIKELIHOOD: -453.31020547309746918
decay = 200
LIKELIHOOD: -455.60427751963620488
decay = 300
LIKELIHOOD: -457.55504512655053048
decay = 400
LIKELIHOOD: -459.77356486909289682
decay = 500
LIKELIHOOD: -462.28314936443129823
decay = 800
LIKELIHOOD: -467.64992945445549563
sd = 2.5e+02
decay = 1
LIKELIHOOD: -455.23557070156895282
decay = 25
LIKELIHOOD: -454.2077557303965941
decay = 50
LIKELIHOOD: -453.44966019025554418
decay = 75
LIKELIHOOD: -453.1334328515795517
decay = 100
LIKELIHOOD: -453.20363744832092587
decay = 200
LIKELIHOOD: -455.16976392805917848
decay = 300
LIKELIHOOD: -457.04425376810130402
decay = 400
LIKELIHOOD: -458.91505941849989836
decay = 500
LIKELIHOOD: -461.0726969304386427
decay = 800
LIKELIHOOD: -466.14158185950186533
sd = 2.7e+02
decay = 1
LIKELIHOOD: -455.57885609387940265
decay = 25
LIKELIHOOD: -454.57132519765694442
decay = 50
LIKELIHOOD: -453.74770977994246274
decay = 75
LIKELIHOOD: -453.2855201935599728
decay = 100
LIKELIHOOD: -453.1898634548348642
decay = 200
LIKELIHOOD: -454.74653893496994478
decay = 300
LIKELIHOOD: -456.58460954787927646
decay = 400
LIKELIHOOD: -458.19991704919624617
decay = 500
LIKELIHOOD: -460.03880668991435948
decay = 800
LIKELIHOOD: -464.90801264703225543
sd = 2.9e+02
decay = 1
LIKELIHOOD: -455.9156242965076054
decay = 25
LIKELIHOOD: -454.9317570281475258
decay = 50
LIKELIHOOD: -454.08577483892410886
decay = 75
LIKELIHOOD: -453.5133408167544866
decay = 100
LIKELIHOOD: -453.26720794491076555
decay = 200
LIKELIHOOD: -454.3605083502397026
decay = 300
LIKELIHOOD: -456.14756204452705252
decay = 400
LIKELIHOOD: -457.59489368637552548
decay = 500
LIKELIHOOD: -459.1591950976690657
decay = 800
LIKELIHOOD: -463.7544796460363169
sd = 3.1e+02
decay = 1
LIKELIHOOD: -456.25367035925208012
decay = 25
LIKELIHOOD: -455.2800837014175355
decay = 50
LIKELIHOOD: -454.44200863980016397
decay = 75
LIKELIHOOD: -453.79987139451270234
decay = 100
LIKELIHOOD: -453.42781213931766704
decay = 200
LIKELIHOOD: -454.03565994411300372
decay = 300
LIKELIHOOD: -455.71378598344100586
decay = 400
LIKELIHOOD: -457.07093976366805646
decay = 500
LIKELIHOOD: -458.410045346040191
decay = 800
LIKELIHOOD: -462.60676171081812266
sd = 3.4e+02
decay = 1
LIKELIHOOD: -456.6039693479672636
decay = 25
LIKELIHOOD: -455.61822006414344463
decay = 50
LIKELIHOOD: -454.7976906320976001
decay = 75
LIKELIHOOD: -454.12403004668987402
decay = 100
LIKELIHOOD: -453.6576983273510101
decay = 200
LIKELIHOOD: -453.7885234378801509
decay = 300
LIKELIHOOD: -455.28020993885302006
decay = 400
LIKELIHOOD: -456.59931830796368588
decay = 500
LIKELIHOOD: -457.77022036691152745
decay = 800
LIKELIHOOD: -461.4987957339438555
sd = 3.7e+02
decay = 1
LIKELIHOOD: -456.9774224106485075
decay = 25
LIKELIHOOD: -455.95684013967074322
decay = 50
LIKELIHOOD: -455.14336025742183156
decay = 75
LIKELIHOOD: -454.46455084962423135
decay = 100
LIKELIHOOD: -453.93814441082432168
decay = 200
LIKELIHOOD: -453.62745050522627566
decay = 300
LIKELIHOOD: -454.86095483516223334
decay = 400
LIKELIHOOD: -456.15261688959109743
decay = 500
LIKELIHOOD: -457.21655293985945515
decay = 800
LIKELIHOOD: -460.47273905505571337
sd = 4e+02
decay = 1
LIKELIHOOD: -457.38062596408686247
decay = 25
LIKELIHOOD: -456.30873661316808645
decay = 50
LIKELIHOOD: -455.48034957107558793
decay = 75
LIKELIHOOD: -454.80443928357987213
decay = 100
LIKELIHOOD: -454.24769271673010013
decay = 200
LIKELIHOOD: -453.554557502422045
decay = 300
LIKELIHOOD: -454.4807307301622342
decay = 400
LIKELIHOOD: -455.7124742610043989
decay = 500
LIKELIHOOD: -456.72315374715558373
decay = 800
LIKELIHOOD: -459.55146837227795453
saving /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/results/ripples/rat1day1_spikemat0_4cm_3ms_poisson_momentum_gridsearch.obj
done
poetry run python3 scripts/o2/sg_gridsearch.py 0 real ripples 3 poisson real
sample output:
running diffusion gridsearch for {session_indicator}
loading /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/data/structure_analysis_input/rat1day1_ripples_4cm_3ms_poisson.obj
sd = 0.01
sd = 0.01
sd = 0.01
sd = 0.02
sd = 0.02
sd = 0.02
sd = 0.03
sd = 0.04
sd = 0.04
sd = 0.05
sd = 0.06
sd = 0.07
sd = 0.09
sd = 0.11
sd = 0.13
sd = 0.15
sd = 0.19
sd = 0.22
sd = 0.27
sd = 0.32
sd = 0.39
sd = 0.46
sd = 0.56
sd = 0.67
sd = 0.8
sd = 0.96
sd = 1.1
sd = 1.4
sd = 1.7
sd = 2.0
saving /Users/iteloo/dev/hippocampal-replay/vendor/HippocampalSWRDynamics/replay_structure/results/ripples/rat1day1_4cm_3ms_poisson_stationary_gaussian_gridsearch.obj
done
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