Name: Howard Hughes Medical Institute
Type: Organization
Bio: GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.
Location: 19700 Helix Drive, Ashburn, VA 20147
Blog: http://www.janelia.org
Howard Hughes Medical Institute's Projects
this repo supports the April 2020 git and GitHub course held "at" Janelia
3D fiber structure auto segmentation. Adjusted for Fly brain/VNC
Kleio python API for data streaming using Flask
local scheduler for heterogenous jobs
A repository for official apiman plugins.
Utility programs for Aquatics
A Matlab function for converting .avi videos to .ufmf videos
A curated list of awesome Janelia software
Library of common utility functions for AWS S3
Acoustic Segmenter
batch what Nvidia does not
Supporting Software for Benedetti et al. 2024
ImgLib2-based viewer for registered SPIM stacks and more
Big FeaTure Aligner: a scalable solution for feature alignment
Running compute-intense parts of BigStitcher distributed
Tools for distributed alignment of massive images
Testdata for bigstream
Tools for distributed alignment of massive images
Birdsong colony management and analysis
Scripts to use Blender for physical simulations in python
Scripts for Blender to render 360-degree spherical videos.
Branson Lab settings folder for FlyDiscoAnalysis
Burst compute framework for AWS
Code to generate C. Elegans Models
Ultilities for CATMAID, mostly ImgLib2 based
ChIP-seq peak-calling, QC and differential analysis pipeline.