janickweberpals / quarto_icpe_2024

Introduction to Quarto for reproducible programming and reporting in real-world evidence studies

About

This repository contains all materials for the introduction to literate programming and reporting using quarto.

Slides can be accessed at: https://janickweberpals.github.io/quarto_icpe_2024/index.html#/title-slide

Dependencies

This is a quarto project and dependencies are managed through the renv package. All packages and their versions can be viewed in the lockfile renv.lock. All required packages and the appropriate versions can be installed by running the following command:

renv::restore()

The dependencies are managed through Posit's repository package manager (RSPM) version for the MacOS distributions. If you use a different operating system, please head over to the RSPM setup website and follow these steps:

1. Go to the RSPM setup website

2. Choose the operating system (if Linux, also choose the Linux distribution)

3. Go to Repository URL: and copy-paste the URL to the options statement in the .Rprofile file

   options(repos = c(REPO_NAME = "URL"))

Reproducibility

Follow these steps in RStudio to reproduce the presentation:

1. Install all necessary dependencies (see above)
2. Run all scripts via quarto render or in RStudio Build > Render Book (make sure quarto is installed)