jaybee84 Goto Github PK

absehrd

agedbrain

Code and files for reproducing the analysis presented in "Neuropathological and transcriptomic characteristics of the aged brain," the platform paper for the Aging, Dementia, and TBI Study.

alphamissense

att_ss

Experiments, data and analysis on the interactions between attention and surround suppression

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

benchscofi

Package which contains implementations of published collaborative filtering-based algorithms for drug repurposing.

big-bench

Beyond the Imitation Game collaborative benchmark for measuring and extrapolating the capabilities of language models

biogpt

catalog

Made with Manubot catalog (please add your manuscript!!)

cdom

Identify commonly mutated protein domains in a given Mutation Annotation Format file.

ceres

Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens

challenge-analysis

A template project for post-challenge analysis with template R markdown files describing important analyses.

cleanlab

The standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.

cnf_brousseau_hippo

Mutation analysis of cNF in humans

covid-chestxray-dataset

We are building an open database of COVID-19 cases with chest X-ray or CT images.

cross-modal-ssl-htnet

csbc-pson-dcc

Data coordination resources for the NCI CSBC and PS-ON consortia

data-centric-ai

A curated, but incomplete, list of data-centric AI resources.

data-engineer-resume-latex

A LaTeX resume template, tailored for the recent graduate who aspires to be a Data Scientist/Engineer.

datahub

A centralized location for storing curated data ready for inclusion in cBioPortal.

deepsomatic

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.

dnabert

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

dnabert_2

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

dnabert_s

DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models

druid

DRUg Indication Discoverer

ecarenet

gatk

Official code repository for GATK versions 4 and up

gene_exp_viewer

This is a link to the Rshiny tool

genie

Validation and processing of GENIE files: https://www.synapse.org/genie

gooddoc

A Template for Clear and Simple Documentation of Bioinformatics Code