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DataAnalysisPipeline

Pipeline for the analysis of lung adenocarcinoma data from The Cancer Genome Atlas (TCGA) using Scala and Apache Flink.

Development Environment:

Requirements:

Data:

  • The analysis using the lung adenocarcinoma data available on TCGA website.
  • The data for the analysis were downloaded on 12th August 2015 9:19am.
  • The following data were downloaded:
    • Clinical (Biotab)
    • Exp-Gene
    • miRNASeq

Parameters:

  • input file
  • output path

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