Comments (2)
mlhoggard
commented on August 19, 2024
2
Hi @YiJessePi ,
Apologies for the slow reply, but no, in the end I simply decided to omit DeepVirFinder from my RNA virus workflow.
And in the case of RNA viruses, at this stage I'm not sure how much added benefit this approach would bring above other available tools like VIBRANT, VirSorter2, and target gene-based (e.g. RdRp) searches anyway, so I'm sticking with them for the time being.
I also gather the DVF maintainer might have moved on to another job now (judging by their profile page), so I suspect this tool might not get much support or development going forward?
Regards,
Mike.
from deepvirfinder.
YiJessePi
commented on August 19, 2024
Hey,
Did you managed to understand deepVF performance on viral RNA data?
from deepvirfinder.
Related Issues (20)
- filelog not imported HOT 3
- ValueError: not enough values to unpack HOT 3
- Server's running time
- DeepVirFinder gets stuck on some sequences HOT 2
- Runtime Error during test-run HOT 2
- Stuck on loading models? HOT 2
- AttributeError: ('The following error happened while compiling the node', DotModulo(A, s, m, A2, s2, m2), '\n', "module 'numpy.core.multiarray' has no attribute '_get_ndarray_c_version'") HOT 3
- DeepVirFinder isn't work post conda install HOT 1
- Results processing and extraction of region?
- issue installing using conda, python=2.7 required HOT 1
- Make a versioned release HOT 2
- File "/data1/qinjunjun/zhu_bingduzu/DeepVirFinder/dvf.py", line 212, in <module>
- Test module falling after installation HOT 4
- Suggestion: Add mkl-service to conda install command HOT 1
- IndexError: list index out of range (by using trained model for viral sequence scanning)
- training.py :: keras - tensorflow version requirements
- hello,I want to know how to set the -l parameter
- problem when running dvf on HPC HOT 2
- [QUESTION] Support Python 3.7 or later HOT 1
- DVF goes into sleep state HOT 2
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