Comments (2)
soilmicrobiome
commented on July 19, 2024
I also have the same messages when running the program;
- Encoding and Predicting Sequences.
processing line 1
processing line 201
INFO (theano.gof.compilelock): Waiting for existing lock by process '2984' (I am process '2983')
INFO (theano.gof.compilelock): To manually release the lock, delete /home/rachel/.theano/compiledir_Linux-4.4--generic-x86_64-with-debian-jessie-sid-x86_64-3.6.10-64/lock_dir
processing line 401
INFO (theano.gof.compilelock): Waiting for existing lock by process '3735' (I am process '3734')
INFO (theano.gof.compilelock): To manually release the lock, delete /home/rachel/.theano/compiledir_Linux-4.4--generic-x86_64-with-debian-jessie-sid-x86_64-3.6.10-64/lock_dir
processing line 601
did you figure out the issue? Or if its a problem
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ilnamkang
commented on July 19, 2024
I didn't find a solution for this issue.
For my small data (a few hundred metagenomic contigs), turning off "-c" flag and using only 1 core (default value) gave me the best speed.
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