Comments (3)
I have a short tutorial for membrane detection and surface closure that has more details than the short examples included with the "filter_mrc" documentation. This tutorial is currently in markdown format, but I would like to convert it so that it could be hosted on readthedocs.io, along with the doxygen comments in the VISFD library).
Meanwhile, please contact me if anyone wants this in it's current form.
I still need to write a tutorial for blob detection.
-Andrew 2021-6-21
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Update: The contents of this tutorial keep changing as I add features (or fix broken features) in order to make surface detection (somewhat) easier. It's still a laborious process (requiring iterations of user-selected thresholds, and manual image cleaning). But it's gradually getting better.
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My initial attempt to create a tutorial are currently hosted here. It is incomplete, but it is a start.
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Related Issues (15)
- masking is broken HOT 1
- poor signal-to-noise near mask or image boundaries
- [Feature Request] improve signal-to-noise of surface geometry near edges HOT 1
- PoissonRecon generated surfaces are sometimes wrong when using -must-link constraints HOT 1
- warning: incompatible with old versions of GCC
- blob detection stopped working on 2021-10-18 HOT 1
- The "-must-link" argument stopped working on 2021-10-18 HOT 2
- -connect (ClusterConnected()) behaves strangely when compiled without -g HOT 3
- tensor-voting is slow HOT 3
- blob-detection is slow for large blobs HOT 3
- -auto-thresh and -supervised fail if there are a large number of negative controls on both sides of the accepted data HOT 1
- avoid using the "-Ofast" compiler flag HOT 1
- voxelize_mesh.py consumes too much time and memory HOT 2
- [Feature Request] add "must-not-link" constraints
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