Jianshu_Zhao's Projects
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:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
Mostly useful scripts and files for processing MiSeq amplicon data
Harmonious distributed data analysis in Rust.
AmpliCI, a model-based algorithm for denoising Illumina amplicon data.
Extract Illumina read pairs that exactly match primer sequences
Tools for visualising amplicon data
data embedding based on approximate nearest neighbour
reproducing scripts for annembed paper
Combined annotation of GhostKOALA, KAAS, and eggNOG-mapper
antiSMASH
distance based phylogenetic placement
Mathematical optimization in pure Rust
The platform independent header allowing to compile any C/C++ code containing ARM NEON intrinsic functions for x86 target systems using SIMD up to SSE4 intrinsic functions
A pairwise sequence aligner written in Rust
Async version of the Rust standard library
ATLAS - Three commands to start analysing your metagenome data
Rapid & standardized annotation of bacterial genomes & plasmids
A ball-tree implementation for K-NN
count DNA sequence reads in BAM files
Do things with BAM/BWA
An index describing the public and private repositories that Banfield lab members can request access to.
BANNER is a tool that lives inside HULK and aims to make sense of HULK sketches
Example code from O'Reilly's bash Cookbook
Methods to make 16S rRNA gene tree of Bathyarchaeota and intermediate files
Automatically calculate phylogenetic trees from bacterial core genes
de Bruijn graph cOrrectiOn from graph aLignment
🦠 📓 A microbiome paper in ISME