Jianshu_Zhao's Projects
Full-service command-line parsing
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
This code for 'Spatial scales of species coexistence' by Harte and Levin
Python modules and classes to run robustness simulations on networks
OTU co-occurrence network inferrence base on null model for HPC
Rust wrappers for NGT approximate nearest neighbor search
Simple and transparent support for compressed files.
python function for non-parametric multidimensional scaling
Fast exact similarity search for genomic sequences, using NMSLIB
Estimate metagenomic coverage and sequence diversity
Bioinformatics I/O libraries in Rust
Navigating Spreading-out Graph For Approximate Nearest Neighbor Search
ntHash implementation in Rust
Rust wrapper for STAR aligner
🎯 Pinpoint the origin of replication (oriC) for bacterial genomes
A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
Phylogenetic orthology inference for comparative genomics
Prediction of microbial interactions in complex communities
Bit-level packing and unpacking for Rust
Pairwise multilevel comparison using adonis
Workflows and R scripts for Lee and Sorensen et al
paprica - PAthway PRediction by phylogenetIC plAcement
Parallel Implementation of HMM on Multicore Platform
Parallel k-nearest neighbor algorithm using c++ threads