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nameless

Full-service command-line parsing

nanoclust

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

ncyc

nee_speciescoexistence

This code for 'Spatial scales of species coexistence' by Harte and Levin

network-robustness

Python modules and classes to run robustness simulations on networks

networknullhpc

OTU co-occurrence network inferrence base on null model for HPC

neutral_mete_comparison

ngt-rs

Rust wrappers for NGT approximate nearest neighbor search

niffler

Simple and transparent support for compressed files.

nmds

python function for non-parametric multidimensional scaling

nmssearch

Fast exact similarity search for genomic sequences, using NMSLIB

nonpareil

Estimate metagenomic coverage and sequence diversity

noodles

Bioinformatics I/O libraries in Rust

nsg

Navigating Spreading-out Graph For Approximate Nearest Neighbor Search

nthash

ntHash implementation in Rust

nuc2bit

omhismb2019

orbit

Rust wrapper for STAR aligner

orifinder

🎯 Pinpoint the origin of replication (oriC) for bacterial genomes

orthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

orthofinder

Phylogenetic orthology inference for comparative genomics

ortsuite

Prediction of microbial interactions in complex communities

packed_struct.rs

Bit-level packing and unpacking for Rust

paddy-soil

pairwiseadonis

Pairwise multilevel comparison using adonis

paper_gradysorensenstopnisek_natcomm_2019

paper_leesorensen_ismej_2017

Workflows and R scripts for Lee and Sorensen et al

paprica

paprica - PAthway PRediction by phylogenetIC plAcement

parahmm

Parallel Implementation of HMM on Multicore Platform

parallel-k-nearest-neighbor

Parallel k-nearest neighbor algorithm using c++ threads