jonasbrusokas / neuralcde

Code for "Neural Controlled Differential Equations for Irregular Time Series"

Neural Controlled Differential Equations
for Irregular Time Series
[arXiv, YouTube]

Building on the well-understood mathematical theory of controlled differential equations, we demonstrate how to construct models that:

• Act directly on irregularly-sampled partially-observed multivariate time series.
• May be trained with memory-efficient adjoint backpropagation - even across observations.
• Demonstrate state-of-the-art performance.

They are straightforward to implement and evaluate using existing tools, in particular PyTorch and the torchcde library.

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Library

See torchcde.

Example

We encourage looking at example.py, which demonstrates how to use the library to train a Neural CDE model to predict the chirality of a spiral.

Also see irregular_data.py, for demonstrations on how to handle variable-length inputs, irregular sampling, or missing data, all of which can be handled easily, without changing the model.

A self contained short example:

import torch
import torchcde

# Create some data
batch, length, input_channels = 1, 10, 2
hidden_channels = 3
t = torch.linspace(0, 1, length)
t_ = t.unsqueeze(0).unsqueeze(-1).expand(batch, length, 1)
x_ = torch.rand(batch, length, input_channels - 1)
x = torch.cat([t_, x_], dim=2)  # include time as a channel

# Interpolate it
coeffs = torchcde.natural_cubic_spline_coeffs(x)
X = torchcde.NaturalCubicSpline(coeffs)

# Create the Neural CDE system
class F(torch.nn.Module):
    def __init__(self):
        super(F, self).__init__()
        self.linear = torch.nn.Linear(hidden_channels, 
                                      hidden_channels * input_channels)
    def forward(self, t, z):
        return self.linear(z).view(batch, hidden_channels, input_channels)

func = F()
z0 = torch.rand(batch, hidden_channels)

# Integrate it
torchcde.cdeint(X=X, func=func, z0=z0, t=X.interval)

Reproducing experiments

Everything to reproduce the experiments of the paper can be found in the experiments folder. Check the folder for details.

Results

As an example (taken from the paper - have a look there for similar results on other datasets):

Citation

@article{kidger2020neuralcde,
    author={Kidger, Patrick and Morrill, James and Foster, James and Lyons, Terry},
    title={{Neural Controlled Differential Equations for Irregular Time Series}},
    year={2020},
    journal={arXiv:2005.08926}
}