Comments (1)
Instead of catching samples, the most accurate reference will be selected from the reference mapping sequence. users will be able to indicate if it needs to select the best one in the given dataset.
from viralgenie.
Related Issues (20)
- Refactor splitting up parts for cleaner code
- Explore capabalities of COMEBin
- Difference in depth bcftools mpileup vs samtools mpileup HOT 2
- Identify total number of reads after host-removal not just % HOT 1
- Make a conda biocontainer for viralgenie
- Simplify preclustering of contigs up to a certain level HOT 1
- Migrate annotation files to external repo HOT 1
- Refactor readclassifier & preclustering HOT 1
- autodetect paired-end
- Out-of-memory during NETWORK_CLUSTER process on unclassified taxa
- Contig consensus 0 coverage
- Include coverage plot in MQC HOT 1
- nf-test
- patch nf-core template
- patch nf-core modules
- Include sspace & cobra for contig extension
- Set default UMI-tools dedup strategy to a non-read counting method
- Vazymolo
- Make a quick start section
- FIx OOM for long contigs
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from viralgenie.